Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccattgaactactgatccgcacaaaaaattgtcgatcaatggtgttatttagtttagtagtaacttagtactgactatacacggcatggattttctatggtctgacaagttaatttgatttgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTGGATG

Basic information

species Oryza sativa
transcript LOC_Os01g60830.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g60830.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G027478_T01 (Zea mays), 3'ss of exon 1
gtatccattgaactactgatccgcacaaaaaattgtcgatcaatg-gtgttatttagtttagtagtaacttagtactgactatacacggcatggattttctatggtctgacaagttaatttgatttgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTGGATG
                                           || || | ||  |    |   |   ||   || ||  |||      |||   |  |||   |  | |   |||  ||||||||||||||||||| ||||||||| || ||||||| |||||||||||| |||||||||||||||||||||| || |
------------------------------------------gtgtgtatcatgcaaagcaactgcggctcgataatg-ttatgt-tatcatccgtaatct---gatttatttgttg-tttgatttgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAGTCATATGTTGAAG

upper sequence: LOC_Os01g60830.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ15645 (Selaginella moellendorffii), 3'ss of exon 1
gtatccattgaactactgatccgcacaaaaaattgtcgatcaatggtgttatttagtttagtagtaacttagtactgactatacacggcatggattttctatggtctgacaagttaatttgatttgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTGGATG
                                                         |  | |  ||| |  |   ||  | |||   || | ||||   ||  |||  |   || | ||   |||||     ||| | ||| ||  || ||||||||||||||||||||||||||||||||||   ||   | ||||
--------------------------------------------------------gtacgaaaaaacatctttgagaaaaaacatc-cacgaatttctcatc-tctccctttttgactt---ttgca-----gTACGCAGCTCTGAGGCGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAAGAATCAATCGATG

upper sequence: LOC_Os01g60830.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ15647 (Selaginella moellendorffii), 3'ss of exon 1
gtatccattgaactactgatccgcacaaaaaattgtcgatcaatggtgttatttagtttagtagtaacttagtactgactatacacggcatg-gattttctatggtctgacaagttaatttgatttgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTGGATG
                                                     ||    |  |     ||   |   |  || ||  || || || |||||    |||  |   || | ||   |||||     ||| | ||| ||  || ||||||||||||||||||||||||||||||||||   ||   | ||||
----------------------------------------------------gtacgaaaaaacatctttgagaaaaaacatccaatgcgtgcgaatttctcatctctcccttcttgactt---ttgca-----gTACGCAGCTCTGAGGCGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAAGAATCAATCGATG

upper sequence: LOC_Os01g60830.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ11214 (Selaginella moellendorffii), 3'ss of exon 1
gtatccattgaactactgatccgcacaaaaaattgtcgatcaatggtgttatttagtttagtagtaacttagtactgactatacacggcatg-gattttctatggtctgacaagttaatttgatttgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTGGATG
                                                     ||    |  |     ||   |   |  || ||  || ||  | |||||    |||  |   || | ||   |||||     ||| | ||| ||  || ||||||||||||||||||||||||||||||||||   ||   | ||||
----------------------------------------------------gtacgaaaaaacatctttgagaaaaaacatccaacgcgtgcaaatttctcatctctcccttcttgactt---ttgca-----gTACGCAGCTCTGAGGCGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAAGAATCAATCGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88665035|gb|CI707105.1|CI707105
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCAC
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCAC
EST: gi|88369115|gb|CI678640.1|CI678640
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCAGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88664847|gb|CI703621.1|CI703621
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88662178|gb|CI465970.1|CI465970
EST:     AGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: AGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88459334|gb|CI517012.1|CI517012
EST:     ATGAAGCC--AGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88438317|gb|CI541061.1|CI541061
EST:     AGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: AGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|55413504|gb|CV725880.1|CV725880
EST:     TGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: TGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|33666797|gb|CF297764.1|CF297764
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|112786877|gb|EE591615.1|EE591615
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|55437018|gb|CV731706.1|CV731706
EST:     GAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: GAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88959388|gb|CI685869.1|CI685869
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCAGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88663015|gb|CI477119.1|CI477119
EST:     AAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: AAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|33664957|gb|CF295924.1|CF295924
EST:     AAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: AAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88661567|gb|CI456679.1|CI456679
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCAGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88688469|gb|CI732045.1|CI732045
EST:     ATGAAGCCAGAG-G-CCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATT
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATT
EST: gi|88454072|gb|CI691402.1|CI691402
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCG
EST: gi|38480356|gb|CF964445.1|CF964445
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88663304|gb|CI478414.1|CI478414
EST:     GATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCAGTGGCACCTACAAGGATTTCTTCAAG
genomic: GATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|38478506|gb|CF962639.1|CF962639
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|95101695|gb|CI692950.1|CI692950
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88664719|gb|CI701894.1|CI701894
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACA
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACA
EST: gi|88663584|gb|CI483448.1|CI483448
EST:     CCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: CCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|55413503|gb|CV725879.1|CV725879
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88663812|gb|CI486873.1|CI486873
EST:     CAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: CAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|55437876|gb|CV732230.1|CV732230
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88662280|gb|CI464463.1|CI464463
EST:     TGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCAGTGGCACCTACAAGGATTTCTTCAAG
genomic: TGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|33677254|gb|CF305493.1|CF305493
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|33663240|gb|CF294207.1|CF294207
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88453609|gb|CI681844.1|CI681844
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGACCACTCCGGAGGAACATCGGTGGCACCTACAAGGATTTCTTCCAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|313079211|gb|HO663792.1|HO663792
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88587713|gb|CI704425.1|CI704425
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGAT
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGAT
EST: gi|55437016|gb|CV731705.1|CV731705
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|33676980|gb|CF305219.1|CF305219
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|4716749|gb|AU057865.1|AU057865
EST:     CAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: CAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88664532|gb|CI699038.1|CI699038
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCAGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|55437874|gb|CV732229.1|CV732229
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88661696|gb|CI457387.1|CI457387
EST:     CAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCAGTGGCACCTACAAGGATTTCTTCAAG
genomic: CAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88664313|gb|CI687101.1|CI687101
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|33676945|gb|CF305184.1|CF305184
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|33666798|gb|CF297765.1|CF297765
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|33663241|gb|CF294208.1|CF294208
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88664469|gb|CI697724.1|CI697724
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88662688|gb|CI472250.1|CI472250
EST:     TGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: TGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88304002|gb|CI513076.1|CI513076
EST:     ATGAAGCC--AGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|88663387|gb|CI481484.1|CI481484
EST:     CACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAT
genomic: CACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
EST: gi|55434716|gb|CV730482.1|CV730482
EST:     ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAG                         TATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG
genomic: ATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 64 (downstream exon)
Score: 178

GGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGgtatccattg ... tgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTGGATG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatacacggcatggattttctatggtctgacaagttaatttgatttgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTGGATG
                               aagttaatttgattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatccattgaactactgatccgcacaaaaaattgtcgatcaatggtgttatttagtttagtagtaacttagtactgactatacacggcatggattttctatggtctgacaagttaatttgatttgcaatgaagTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTGGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA