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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGGTGCAGTGTCAGGCTCTTTGATTGGCTTTGTGGTGGCTTCTATCATCCGACCACCTTATCCATACTTCAAGTTCACTGTGATTCACATTGGAATAGgtacctggttttctttattaaataaagttgccttctcatttatcattcttctattttatattgatccgatcccttatttcgattcag

Basic information

species Oryza sativa
transcript LOC_Os01g60230.4
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58691905|gb|CK080592.1|CK080592
EST:     CCGACCACCTTATCCATACTTCAAGTTCACTGTGATTCACATTGGAATAG                         GGAATATTGGAAATATACCTCTGGTTCTCATTGCAGCATTATGTCGAGATC
genomic: CCGACCACCTTATCCATACTTCAAGTTCACTGTGATTCACATTGGAATAGgtacctggtt ... ttcgattcagGGAATATTGGAAATATACCTCTGGTTCTCATTGCAGCATTATGTCGAGATC
EST: gi|20331187|gb|AJ312763.1|AJ312763
EST:     CCGACCACCTTATCCATACTTCAAGTTCACTGTGATTCACATTGGAATAG                         GGAATATTGGAAATATACCTCTGGTTCTCATTGCAGCATTATGTCGAGATC
genomic: CCGACCACCTTATCCATACTTCAAGTTCACTGTGATTCACATTGGAATAGgtacctggtt ... ttcgattcagGGAATATTGGAAATATACCTCTGGTTCTCATTGCAGCATTATGTCGAGATC
EST: gi|58607989|gb|CK036022.1|CK036022
EST:     CCGACCACCTTATCCATACTTCAAGTTCACTGTGATTCACATAGGAATAG                         GGAATATTGGAAATATACCTCTGGTTCTCATT
genomic: CCGACCACCTTATCCATACTTCAAGTTCACTGTGATTCACATTGGAATAGgtacctggtt ... ttcgattcagGGAATATTGGAAATATACCTCTGGTTCTCATT