1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacctggttttctttattaaataaagttgccttctcatttatcattcttctattttatattgatccgatcccttatttcgattcagGGAATATTGGAAATATACCTCTGGTTCTCATTGCAGCATTATGTCGAGATCCCACCAATCCTTTTGGTGACTCTGATAAATGTAATGAAGATGGGAATGC
species | Oryza sativa |
transcript | LOC_Os01g60230.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGACCACCTTATCCATACTTCAAGTTCACTGTGATTCACATTGGAATAG GGAATATTGGAAATATACCTCTGGTTCTCATTGCAGCATTATGTCGAGATCEST: gi|20331187|gb|AJ312763.1|AJ312763
genomic: CCGACCACCTTATCCATACTTCAAGTTCACTGTGATTCACATTGGAATAGgtacctggtt ... ttcgattcagGGAATATTGGAAATATACCTCTGGTTCTCATTGCAGCATTATGTCGAGATC
EST: CCGACCACCTTATCCATACTTCAAGTTCACTGTGATTCACATTGGAATAG GGAATATTGGAAATATACCTCTGGTTCTCATTGCAGCATTATGTCGAGATCEST: gi|58607989|gb|CK036022.1|CK036022
genomic: CCGACCACCTTATCCATACTTCAAGTTCACTGTGATTCACATTGGAATAGgtacctggtt ... ttcgattcagGGAATATTGGAAATATACCTCTGGTTCTCATTGCAGCATTATGTCGAGATC
EST: CCGACCACCTTATCCATACTTCAAGTTCACTGTGATTCACATAGGAATAG GGAATATTGGAAATATACCTCTGGTTCTCATT
genomic: CCGACCACCTTATCCATACTTCAAGTTCACTGTGATTCACATTGGAATAGgtacctggtt ... ttcgattcagGGAATATTGGAAATATACCTCTGGTTCTCATT
ttctcatttatcattcttctattttatattgatccgatcccttatttcgattcagGGAATATTGGAAATATACCTCTGGTTCTCATTGCAGCATTATGTCGAGATCCCACCAATCCTTTTGGTGACTCTGATAAATGTAATGAAGATGGGAATGC
tattgat putative branch site (score: 52)
tcccttatttc putative PPT
atttatcattcttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctggttttctttattaaataaagttgccttctcatttatcattcttctattttatattgatccgatcccttatttcgattcagGGAATATTGGAAATATACCTCTGGTTCTCATTGCAGCATTATGTCGAGATCCCACCAATCCTTTTGGTGACTCTGATAAATGTAATGAAGATGGGAATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG