Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGAGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttccacctttctaggctattggtctgcatttacatatccatttaaattgttttttgaacttgaatattatttatgttggtaaagctgaaatgg...

Basic information

species Oryza sativa
transcript LOC_Os01g59990.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59990.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA03G34700.1 (Glycine max), 5'ss of exon 4
CATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGAGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttccacctttctaggctattggtctgcatttacatatccattta-aattgttttttgaacttgaatattatttatgttggtaaagctgaaatgg----
| |||||  |||| ||||||||||| || |||||||||||||| || |||||   |||||| || ||||| || |||||||| || ||||| ||||| ||||   ||||    |||| |  | | |  | || | ||   || | | |||     | | || |  |  || |||  | | | |||   |    |  |||      
CTTACTCTAGGTCCATTGTTGGTGCCACTCTGGAAGTTATCCAGAAAAAGAGAGCTGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCTGCTCTTCGgtgtgtttt---tctttatttgtt-tctgcctactttcggatttgcttttctggatttgttatagatgtgcatac-aatcacgttctcagccatttaattcctta

upper sequence: LOC_Os01g59990.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT3G53020.1 (Arabidopsis thaliana), 5'ss of exon 4
CATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGAGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttccacctttct-aggctattggtct-gcatttacata--tccatttaaattgttttttgaacttgaatattatttatgttggtaaagctgaaatgg
|||||||| |||| ||||||||||||||  ||||||| || || ||||||||   |||||| |||||||| |||||||||||||| ||||| ||||| ||||   |||||  ||| | | |    ||    || | ||| | |||  |  |||| | ||  |   || | |   ||  |  ||        |            
CATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttctccctctgtcaaatcatccaactaggattaaaatagttatatttgacttaataaatgtattgtgatgatgattcaacaaacag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15847107|gb|BI795383.1|BI795383
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88997379|gb|CI390045.1|CI390045
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAATGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88669580|gb|CI723244.1|CI723244
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88997741|gb|CI390317.1|CI390317
EST:     AGGAGTTAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAATGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|30228671|gb|CB966561.1|CB966561
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAG
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAG
EST: gi|88569104|gb|CI499821.1|CI499821
EST:     CTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: CTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88237518|gb|CI237367.1|CI237367
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88472044|gb|CI409315.1|CI409315
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88207955|gb|CI207804.1|CI207804
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|89169421|gb|CI038430.1|CI038430
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCCAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|5004080|gb|AU069229.1|AU069229
EST:     GAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: GAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88240764|gb|CI239926.1|CI239926
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88203784|gb|CI203633.1|CI203633
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|15850233|gb|BI798509.1|BI798509
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|86837161|gb|CI347658.1|CI347658
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|163926636|gb|EG713652.1|EG713652
EST:     GGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGA
genomic: GGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTC-TCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGA
EST: gi|218481886|gb|FG948632.1|FG948632
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|33806682|gb|CF329222.1|CF329222
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|14981286|gb|BI305964.1|BI305964
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGANAAAAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAA
EST: gi|88446309|gb|CI563139.1|CI563139
EST:     ACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: ACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88215221|gb|CI215070.1|CI215070
EST:     CTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: CTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88297506|gb|CI550569.1|CI550569
EST:     AGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|86529425|gb|CI169631.1|CI169631
EST:     TCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: TCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88517522|gb|CI445176.1|CI445176
EST:     AGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88669259|gb|CI719397.1|CI719397
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATNC-AGAAAA-CAAGGATGAGAAAAAGGCAAAGA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCAT-CAAGAAAACCAAGGATGAGAAAAAGGCAAAG-
EST: gi|88202159|gb|CI202514.1|CI202514
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88379827|gb|CI504026.1|CI504026
EST:     AGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88295474|gb|CI527837.1|CI527837
EST:     AGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88210649|gb|CI210498.1|CI210498
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88240851|gb|CI238702.1|CI238702
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88379967|gb|CI513557.1|CI513557
EST:     TGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: TGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|86525558|gb|CI165764.1|CI165764
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88511884|gb|CI439390.1|CI439390
EST:     AGGANTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAANCGGCTGTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|33654060|gb|CF276674.1|CF276674
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88206112|gb|CI205961.1|CI205961
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88237430|gb|CI237279.1|CI237279
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|87018104|gb|CI275918.1|CI275918
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|87021329|gb|CI295388.1|CI295388
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|89193914|gb|CI018232.1|CI018232
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|86431777|gb|CI085388.1|CI085388
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|163922730|gb|EG712201.1|EG712201
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88845239|gb|CI084164.1|CI084164
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|86855552|gb|CI267081.1|CI267081
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|15852232|gb|BI805028.1|BI805028
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGC-AAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88667985|gb|CI722724.1|CI722724
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88373485|gb|CI503578.1|CI503578
EST:     CAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: CAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|58595470|gb|CK005998.1|CK005998
EST:     TGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: TGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|87029957|gb|CI267970.1|CI267970
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88209988|gb|CI209837.1|CI209837
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|33690835|gb|CF319074.1|CF319074
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88293961|gb|CI510269.1|CI510269
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|87027026|gb|CI261473.1|CI261473
EST:     CCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: CCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88675859|gb|CI729431.1|CI729431
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88263728|gb|CI366629.1|CI366629
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAATGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88265772|gb|CI376674.1|CI376674
EST:     GAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: GAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|87018566|gb|CI252320.1|CI252320
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|86594449|gb|CI253348.1|CI253348
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|55439111|gb|CV732857.1|CV732857
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88380445|gb|CI518815.1|CI518815
EST:     GTCCGTGATGCAGCCAGAGAANCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: GTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|58602306|gb|CK012834.1|CK012834
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|9886379|gb|BE607471.1|BE607471
EST:     ATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: ATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|86854019|gb|CI252010.1|CI252010
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88511885|gb|CI439391.1|CI439391
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88451015|gb|CI531610.1|CI531610
EST:     AACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|58681869|gb|CK070556.1|CK070556
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88689839|gb|CI731417.1|CI731417
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88484047|gb|CI421318.1|CI421318
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|58593374|gb|CF991682.1|CF991682
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88484918|gb|CI422189.1|CI422189
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88211406|gb|CI211046.1|CI211046
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88972745|gb|CI717471.1|CI717471
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|163927525|gb|EG709957.1|EG709957
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAG
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAG
EST: gi|38480261|gb|CF964350.1|CF964350
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88567447|gb|CI498164.1|CI498164
EST:     GCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: GCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88972665|gb|CI717391.1|CI717391
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88238659|gb|CI238508.1|CI238508
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|86523968|gb|CI164174.1|CI164174
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|89170887|gb|CI040164.1|CI040164
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88568568|gb|CI499285.1|CI499285
EST:     AGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|88954570|gb|CI718549.1|CI718549
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA
EST: gi|157650326|gb|EX449960.1|EX449960
EST:     AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTTTCCG                         TGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAG
genomic: AGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 73 (downstream exon)
Score: 206

CATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGAGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttc ... tttataacagTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAAGGCAGAGGTGGCAAAATCTCAGAAGACACAGTCGAAGGGTGGTGCTACC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGAGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttccacctttctaggctattggtctgcatttacatatccatttaaattgttttttgaacttgaatattatttatgttggtaaagctgaaatgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC