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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatcatctttttccaagctctacagccattccttgattatgtgctatcatgggttctcgctactatattctcaattcattgtcatttgagttgtctacagGAGAGCTTCAGTGGCATTAAATGTATGGCAACCACAAGTTGTTCGTGGACGTCAAAAACAATTGGTTCAACAGTGCACAGTTCCAGTTGATTCCCGTCTT

Basic information

species Oryza sativa
transcript LOC_Os01g59910.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59910.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G155285_T01 (Zea mays), 3'ss of exon 2
-tatcatctttttccaagctctacagccattccttgattatgtgctatcatgggttctcgctactatattctcaattcattgtcatttgagttgtctacagGAGAGCTTCAGTGGCATTAAATGTATGGCAACCACAAGTTGTTCGTGGACGTCAAAAACAATTGGTTCAACAGTGCACAGTTCCAGTTGATTCCCGTCTT
  ||    | |   | |  ||| |     |  | || ||   |  | || |          |  |   |   |||||  ||    | |||    |   |||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || || |||||||| || ||||||||||| |||||||||||||||
aaatggcttctgcgccatttcttctttactgtcatggttgcatatt-tcttatcactagtgtgttgattgtgcaatttcttactctgtgaaacatacgcagGAGAGCTTCTGTGGCATTAAACGTATGGCAACCACAAGTTGTTCGTGGTCGTCAGAAGCAGTTGGTTCAGCAATGCACAGTTCCTGTTGATTCCCGTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatgggttctcgctactatattctcaattcattgtcatttgagttgtctacagGAGAGCTTCAGTGGCATTAAATGTATGGCAACCACAAGTTGTTCGTGGACGTCAAAAACAATTGGTTCAACAGTGCACAGTTCCAGTTGATTCCCGTCTT
               tactatatt  TA-rich tract