1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAGAGGAAAAAAGGTCCTCTATTGGCCTCTTCCTTGCCAGgcaagttgataggaagctccattgatctttcccaaatgctgaaagaatctattctcatggtggtgtgtgtaccgtccag
species | Oryza sativa |
transcript | LOC_Os01g59910.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGACTGAAGAGAGAGGAAAAAAGGTCCTCTATTGGCCTCTTCCTTGCCAG CCGCCAGCGGCCAGCTGTTTATACCATAGCTGAATAGTCAGTGCTGCTGGTEST: gi|86412952|gb|CI067357.1|CI067357
genomic: AGACTGAAGAGAGAGGAAAAAAGGTCCTCTATTGGCCTCTTCCTTGCCAGgcaagttgat ... taccgtccagCCGCCAGCGGCCAGCTGTTTATACCATAGCTGAATAGTCAGTGCTGCTGGT
EST: AGACTGAAGAGAGAGGAAAAAAGGTCCTCTATTGGCCTCTTCCTTGCCAG CCGCCAGCGGCCAGCTGTTTATACCATAGCTGAATAGTCAGTGCTGCTGGTEST: gi|89188130|gb|CI115379.1|CI115379
genomic: AGACTGAAGAGAGAGGAAAAAAGGTCCTCTATTGGCCTCTTCCTTGCCAGgcaagttgat ... taccgtccagCCGCCAGCGGCCAGCTGTTTATACCATAGCTGAATAGTCAGTGCTGCTGGT
EST: AGACTGAAGAGAGAGGAAAAAAGGTCCTCTATTGGCCTCTTCCTTGCCAG CCGCCAGCGGCCAGCTGTTTATACCATAGCTGAATAGTCAGTGCTGCTGGT
genomic: AGACTGAAGAGAGAGGAAAAAAGGTCCTCTATTGGCCTCTTCCTTGCCAGgcaagttgat ... taccgtccagCCGCCAGCGGCCAGCTGTTTATACCATAGCTGAATAGTCAGTGCTGCTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAGAGGAAAAAAGGTCCTCTATTGGCCTCTTCCTTGCCAGgcaagttgataggaagctccattgatctttcccaaatgctgaaagaatctattctcatggtggtgtgtgtaccgtccag
- - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - AGAGGA