1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttctgaaagttcagttttgtgcttacatgatgcgattccaccgttccagattcgcacaacaaaggcaaagttctcctgatgtttttgtttctacgtgcagGTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAGAGGAAAAAAGGTCCTCTATTGGCCTCTTCCTTGCCAGGCAAGTTGATAG
species | Oryza sativa |
transcript | LOC_Os01g59910.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATGCAAGTTTGCCTGTGCAACCTTTCGTCCGATCTTCCTTTGTTTGCAG GTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAGEST: gi|33675360|gb|CF303599.1|CF303599
genomic: CATGCAAGTTTGCCTGTGCAACCTTTCGTCCGATCTTCCTTTGTTTGCAGgtatctacta ... ctacgtgcagGTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAG
EST: CATGCAAGTTTGCCTGTGCAACCTTTCGTCCGATCTTCCTTTGTTTGCAG GTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAGEST: gi|29683311|gb|CB679586.1|CB679586
genomic: CATGCAAGTTTGCCTGTGCAACCTTTCGTCCGATCTTCCTTTGTTTGCAGgtatctacta ... ctacgtgcagGTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAG
EST: CATGCAAGTTTGCCTGTGCAACCTTTCGTCCGATCTTCCTTTGTTTGCAG GTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAGEST: gi|29676764|gb|CB673039.1|CB673039
genomic: CATGCAAGTTTGCCTGTGCAACCTTTCGTCCGATCTTCCTTTGTTTGCAGgtatctacta ... ctacgtgcagGTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAG
EST: CATGCAAGTTTGCCTGTGCAACCTTTCGTCCGATCTTCCTTTGTTTGCAG GTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAGEST: gi|29683310|gb|CB679585.1|CB679585
genomic: CATGCAAGTTTGCCTGTGCAACCTTTCGTCCGATCTTCCTTTGTTTGCAGgtatctacta ... ctacgtgcagGTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAG
EST: CATGCAAGTTTGCCTGTGCAACCTTTCGTCCGATCTTCCTTTGTTTGCAG GTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAG
genomic: CATGCAAGTTTGCCTGTGCAACCTTTCGTCCGATCTTCCTTTGTTTGCAGgtatctacta ... ctacgtgcagGTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAG
ccagattcgcacaacaaaggcaaagttctcctgatgtttttgtttctacgtgcagGTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAGAGGAAAAAAGGTCCTCTATTGGCCTCTTCCTTGCCAGGCAAGTTGATAG
tcctgat putative branch site (score: 3)
tttttgtttct CT-rich tract
tttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgaaagttcagttttgtgcttacatgatgcgattccaccgttccagattcgcacaacaaaggcaaagttctcctgatgtttttgtttctacgtgcagGTATGCATGCCACTGATATAACCATGGCAAATGCAAAAAGACTGAAGAGAGAGGAAAAAAGGTCCTCTATTGGCCTCTTCCTTGCCAGGCAAGTTGATAG
ttctgaa
- - - - - - - -tttgtgc
- - - - - - - - - - - - -catgatg
- - - - - - - - - - - - - - - - - - tccaccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgatg