1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgctacgcttttttttttcaattactgcatggttcatctttgaattgtccatttggtggcattttacttatatatgaaaactatgatgtactgcttgcagATTCTTTGTGATGCACTGGGCTCGTGTTCATACTTCAAACTGACAAACAAAAAAGGTTCTTTAACCGGCTTCAGCGATTAATGGCCTTCACTGGGGAGGA
species | Oryza sativa |
transcript | LOC_Os01g59880.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGGGGGTGGGTTTGGGTGGTTTTTGGATCGTGGGGGAGAGGAGCCGAG ATTCTTTGTGATGCACTGGGCTCGTGTTCATACTTCAAACTGACAAACAAAEST: gi|88294899|gb|CI604771.1|CI604771
genomic: TTGGGGGGTGGGTTTGGGTGGTTTTTGGATCGTGGGGGAGAGGAGCCGAGgtgggtatat ... ctgcttgcagATTCTTTGTGATGCACTGGGCTCGTGTTCATACTTCAAACTGACAAACAAA
EST: TTGGGGGGTGGGTTTGGGTGGTTTTTGGATCGTGGGGGAGAGGAGCCGAG ATTCTTTGTGATGCATTGGGCTCGTGTTCATACTTCAAACTGACAAACAAAEST: gi|88395974|gb|CI593176.1|CI593176
genomic: TTGGGGGGTGGGTTTGGGTGGTTTTTGGATCGTGGGGGAGAGGAGCCGAGgtgggtatat ... ctgcttgcagATTCTTTGTGATGCACTGGGCTCGTGTTCATACTTCAAACTGACAAACAAA
EST: TTGGGGGGTGGGTTTGGGTGGTTTTTGGATCGTGGGGGAGAGGAGCCGAG ATTCTTTGTGATGCACTGGGCTCGTGTTCATACTTCAAACTGACAAACAAA
genomic: TTGGGGGGTGGGTTTGGGTGGTTTTTGGATCGTGGGGGAGAGGAGCCGAGgtgggtatat ... ctgcttgcagATTCTTTGTGATGCACTGGGCTCGTGTTCATACTTCAAACTGACAAACAAA
tgtccatttggtggcattttacttatatatgaaaactatgatgtactgcttgcagATTCTTTGTGATGCACTGGGCTCGTGTTCATACTTCAAACTGACAAACAAAAAAGGTTCTTTAACCGGCTTCAGCGATTAATGGCCTTCACTGGGGAGGA
attttacttatatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgctacgcttttttttttcaattactgcatggttcatctttgaattgtccatttggtggcattttacttatatatgaaaactatgatgtactgcttgcagATTCTTTGTGATGCACTGGGCTCGTGTTCATACTTCAAACTGACAAACAAAAAAGGTTCTTTAACCGGCTTCAGCGATTAATGGCCTTCACTGGGGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tggtggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgatgt