1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTGACGCTGTAGGTTTCCCATTCCCGCCGCCGCCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACGgtggaaaacctaagcttttatttggttttgaaagttcttgctgtgtggctttgtctcttggtgtgggcgtttgatcgatgggtggggtgttcgcggtgttttgcag
species | Oryza sativa |
transcript | LOC_Os01g59730.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACG AAGAAGAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|88736541|gb|CI760049.1|CI760049
genomic: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACGgtggaaaacc ... tgttttgcagAAGAAGAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACG AAGAAGAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|88735499|gb|CI759007.1|CI759007
genomic: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACGgtggaaaacc ... tgttttgcagAAGAAGAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACG AAGAAGAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|88722313|gb|CI745823.1|CI745823
genomic: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACGgtggaaaacc ... tgttttgcagAAGAAGAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACG AAGAAAAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|88690331|gb|CI734410.1|CI734410
genomic: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACGgtggaaaacc ... tgttttgcagAAGAAGAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACG AAGAAGAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|58585744|gb|CF984052.1|CF984052
genomic: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACGgtggaaaacc ... tgttttgcagAAGAAGAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACG AAGAAGAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|87004301|gb|CI298833.1|CI298833
genomic: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACGgtggaaaacc ... tgttttgcagAAGAAGAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACG AAGAAGAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
genomic: CCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACGgtggaaaacc ... tgttttgcagAAGAAGAACGCGGAGGGGATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGACGCTGTAGGTTTCCCATTCCCGCCGCCGCCGCCACCGACGCCGTCGCCGACGATCCCATGGCTCCCGTTAAGAAGACGgtggaaaacctaagcttttatttggttttgaaagttcttgctgtgtggctttgtctcttggtgtgggcgtttgatcgatgggtggggtgttcgcggtgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG