Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacaattcctggtgctgagtgcttggctgcaaacaatcttgaatgtgataaattttacccccttgttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA

Basic information

species Oryza sativa
transcript LOC_Os01g59440.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59440.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G121820_T01 (Zea mays), 3'ss of exon 4
gtaagtacaattc-----ctggtgctgagtgcttggctg----caaac-aatcttgaatgtgataaattttacccccttgttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA
|| ||||||  ||     |   || | ||   |    |     || || |||  | ||| | | || | |  || |||| || |||||||||||||||||| |||||| |||| || || ||||| || || |||||||||||||| ||||| || |||||
gtgagtacacgtcagcctcaaatgtttagaattctattctttccacactaatactcaattttacaa-tctacccaccttattatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA

upper sequence: LOC_Os01g59440.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G815009_T02 (Zea mays), 3'ss of exon 4
----gtaagta-caattcctggtgctgagtgcttgg----ctgcaaac-aatcttgaatgtgataaattttacccccttgttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA
    |||| || ||||| |   || | ||   |       || || |  | |  | ||| ||| || | |  || ||||| |||||||| |||||||||||||||||| | ||||| || ||||| ||||| |||||||||||||||||||| || |||||
gtaagtaaatatcaatttcaaatgtttagcattctattctctccagattagtgctcaatttgacaa-tctacccaccttgctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA

upper sequence: LOC_Os01g59440.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G815009_T01 (Zea mays), 3'ss of exon 4
----gtaagta-caattcctggtgctgagtgcttgg----ctgcaaac-aatcttgaatgtgataaattttacccccttgttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA----------------------------
    |||| || ||||| |   || | ||   |       || || |  | |  | ||| ||| || | |  || ||||| |||||||| |||||||||||||||||| | ||||| || ||||| ||||| |||||||||||||||||||| || |||||                            
gtaagtaaatatcaatttcaaatgtttagcattctattctctccagattagtgctcaatttgacaa-tctacccaccttgctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAGTAAGTTACATTCCTACTTTGCATCTTC

upper sequence: LOC_Os01g59440.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA02G44250.2 (Glycine max), 3'ss of exon 4
--------------------gtaagtaca-attcctggtgctgag--tgcttggctgca----aacaatcttgaatgtgataaattttacccccttgttct---ttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA
                    ||   || |  ||  |  || | |      ||||  | |     |  || |    | | | | |   ||  |  |   | |   ||||| ||||| || | ||||||| | ||||| |||||||||||||| || ||||| ||||| |||||  | |  ||
gtagtgtaagtaacaatcttgtgtttatatgttgatcatgataaaatcatttggtggtatcgtgaagatgtgtgctttcaaagagcctaaacattcactttattttcagGGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA

upper sequence: LOC_Os01g59440.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA02G44250.1 (Glycine max), 3'ss of exon 4
---------------gtaagtaca-attcctggtgctgag--tgcttggctgca----aacaatcttgaatgtgataaattttacccccttgttct---ttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA
               ||   || |  ||  |  || | |      ||||  | |     |  || |    | | | | |   ||  |  |   | |   ||||| ||||| || | ||||||| | ||||| |||||||||||||| || ||||| ||||| |||||  | |  ||
gtaagtaacaatcttgtgtttatatgttgatcatgataaaatcatttggtggtatcgtgaagatgtgtgctttcaaagagcctaaacattcactttattttcagGGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA

upper sequence: LOC_Os01g59440.3 (Oryza sativa), 3'ss of exon 3
lower sequence: AT5G21090.1 (Arabidopsis thaliana), 3'ss of exon 4
------------------------gtaagtacaattcctggtgct---------gagtgcttggctgcaaacaatc-ttgaatgtgataaattttaccc-ccttgttctt--tcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA
                        ||  ||  |    ||| | ||          | |||  | || ||  |  |   | ||    | | ||| ||     |||  | ||  ||||||| || |||||||||||| ||||||||||||| || |||   ||||| ||||  ||||||||  ||   ||
gtaagttcagctttttcattgtttgtctgttaacgctctgctacttttctctaaaattgccagacttcatccttttgcttaaaaaaacatattatatttgtcttccttttgctcagTGACGTCTCAAGCAATGATTTGTGTGGAACAATCCCAACAAACGGACCCTTTGCTCACATTCCTTTACAGAA

upper sequence: LOC_Os01g59440.3 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv06s0009g01210.t01 (Vitis vinifera), 3'ss of exon 4
----------------gtaagtacaattcctggtgc-tgagtgcttggctgcaaacaatcttg----aatgtgataa--attttacccccttgttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA
                 ||     | ||  | |||| | |||||||  ||   | |  | | |    | ||   | |  || | |     ||||   ||||||||||||||||||||  |  | |||||||||||||| ||| | ||||| ||||||||||||||  | | |||
gtaagtggttttgttcttatacttattttttagtgcatcagtgctt--ctatgatctgtttagttgtagtgcacttataatgtaaaaaatttgtgtattcagTGATGTTTCAAGCAACAACTTATGTGGAACAATTCCAACAACCGGACCGTTTGAGCACATTCCATTGAACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88241413|gb|CI241262.1|CI241262
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|66916421|gb|CX103269.1|CX103269
EST:     ACTGTGCCAATCCCAATGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTATGTGGAACAATTCCTACATCATGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|87018477|gb|CI252231.1|CI252231
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|55440912|gb|CV733769.1|CV733769
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|87034659|gb|CI189283.1|CI189283
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|86424519|gb|CI063280.1|CI063280
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|87036087|gb|CI189534.1|CI189534
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCGGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|3767181|gb|AU031291.1|AU031291
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|27577115|gb|CA999809.1|CA999809
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|2317317|gb|C22371.1|C22371
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGGCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTTACATCAGGGACCA
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCT-ACATCAGG-ACCA
EST: gi|58593542|gb|CF991850.1|CF991850
EST:     CTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAAGTTCCTACATCAGGACCAT
genomic: CTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAA-TTCCTACATCAGGACCAT
EST: gi|86424442|gb|CI063203.1|CI063203
EST:     GGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: GGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|88515042|gb|CI442696.1|CI442696
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|88239634|gb|CI238796.1|CI238796
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|88442492|gb|CI544059.1|CI544059
EST:     GGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: GGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|86492888|gb|CI135521.1|CI135521
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|88381449|gb|CI528429.1|CI528429
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|86424517|gb|CI063278.1|CI063278
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|88413978|gb|CI530950.1|CI530950
EST:     CTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: CTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|29667098|gb|CB663373.1|CB663373
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|89163681|gb|CI100571.1|CI100571
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|157652581|gb|EX452215.1|EX452215
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|86545317|gb|CI185523.1|CI185523
EST:     CCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: CCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|8856670|gb|AU093988.1|AU093988
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|11173068|gb|AU164597.1|AU164597
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|11442641|gb|BF430544.1|BF430544
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|24468891|gb|CA305840.1|CA305840
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTATGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|86253994|gb|CI058721.1|CI058721
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|3548933|gb|AF074734.1|AF074734
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|86434587|gb|CI105820.1|CI105820
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|86252357|gb|CI056094.1|CI056094
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|88199587|gb|CI199437.1|CI199437
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|88471532|gb|CI408803.1|CI408803
EST:     GGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: GGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|86826587|gb|CI364158.1|CI364158
EST:     ATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTCTGGAACAATTCCTACATCAGGACCATT
genomic: ATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|55409093|gb|CV721469.1|CV721469
EST:     CCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: CCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|88245833|gb|CI245682.1|CI245682
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|86419874|gb|CI054675.1|CI054675
EST:     ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: ACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|88477444|gb|CI414715.1|CI414715
EST:     CCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: CCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
EST: gi|88520127|gb|CI447781.1|CI447781
EST:     AGTCTTAAAGTTGT                         TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT
genomic: AGTCTTAAAGTTGTgtaagtacaa ... gttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttggctgcaaacaatcttgaatgtgataaattttacccccttgttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA
                                 ttttacccccttgttc  CT-rich tract
                      aatgtgataaatttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtacaattcctggtgctgagtgcttggctgcaaacaatcttgaatgtgataaattttacccccttgttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA