1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCGCGGTTTTCATGCCCCTTCTTGAACAACTCTTATCAACGACTACCAGTTACAGAAAATGATGGAAACATTCCTTCTAACCAGACTCGTCAAACTGAGgcaagtatttatactgtatttgttacaatagctcatgttcagcattatttatgttgatgttattgagggacatttgatgataaattcgtttttttgggta...
species | Oryza sativa |
transcript | LOC_Os01g59160.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAATGATGGAAACATTCCTTCTAACCAGACTCGTCAAACTGAG GGTGTGCACCCAACTACAGAAGATCCAATGGAGTCTTCAATCGCTACACTTEST: gi|88518070|gb|CI445639.1|CI445639
genomic: AAATGATGGAAACATTCCTTCTAACCAGACTCGTCAAACTGAGgcaagtattt ... tcttatccagGGTGTGCACCCAACTACAGAAGATCCAATGGAGTCTTCAATCGCTACACTT
EST: TTACAGAAAATGATGGAAACATTCCTTCTAACCAGACTCGTCAAACTGAG GGTGTCCACCCAACTACAGAAGATCCAATGGAGTCTTCAATCGCTACACTTEST: gi|87020452|gb|CI263315.1|CI263315
genomic: TTACAGAAAATGATGGAAACATTCCTTCTAACCAGACTCGTCAAACTGAGgcaagtattt ... tcttatccagGGTGTGCACCCAACTACAGAAGATCCAATGGAGTCTTCAATCGCTACACTT
EST: TTACAGAAAATGATGGAAACATTCCTTCTAACCAGACTCGTCAAACTGAG GGTGTGCACCCAACTACAGAAGATCCAATGGAGTCTTCAATCGCTACACTT
genomic: TTACAGAAAATGATGGAAACATTCCTTCTAACCAGACTCGTCAAACTGAGgcaagtattt ... tcttatccagGGTGTGCACCCAACTACAGAAGATCCAATGGAGTCTTCAATCGCTACACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGCGGTTTTCATGCCCCTTCTTGAACAACTCTTATCAACGACTACCAGTTACAGAAAATGATGGAAACATTCCTTCTAACCAGACTCGTCAAACTGAGgcaagtatttatactgtatttgttacaatagctcatgttcagcattatttatgttgatgttattgagggacatttgatgataaattcgtttttttgggta
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