1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttcatgtggcgatactgcggagtggttgctacttcgctattccttttcgacaggttatgacttaccgcttaagtagttattttttcttttcggaatcagATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAGAAGTACGTCGAGATGATGAAAGCTGAGAACGTCTCCAGAGCGGTATTGG
species | Oryza sativa |
transcript | LOC_Os01g59140.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAG ATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAGEST: gi|29685048|gb|CB681323.1|CB681323
genomic: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAGgtgagccata ... tcggaatcagATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAG
EST: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAG ATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAGEST: gi|88718892|gb|CI742402.1|CI742402
genomic: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAGgtgagccata ... tcggaatcagATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAG
EST: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAG ATATACGTTTTCTTCCCTAACGATGACAAGEST: gi|58611563|gb|CK039275.1|CK039275
genomic: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAGgtgagccata ... tcggaatcagATATACGTTTTCTTCCCTAACGATGACAAG
EST: GCGAGGATCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAG ATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAGEST: gi|33683092|gb|CF311331.1|CF311331
genomic: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAGgtgagccata ... tcggaatcagATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAG
EST: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAG ATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAGEST: gi|87011368|gb|CI289638.1|CI289638
genomic: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAGgtgagccata ... tcggaatcagATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAG
EST: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAG ATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAGEST: gi|87006335|gb|CI293126.1|CI293126
genomic: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAGgtgagccata ... tcggaatcagATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAG
EST: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAG ATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAGEST: gi|58669435|gb|CK058121.1|CK058121
genomic: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAGgtgagccata ... tcggaatcagATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAG
EST: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAG ATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAG
genomic: GCGAGGACCTCCTCATCAACAAGTACAAGAAGAACGATCCCTCCGACCAGgtgagccata ... tcggaatcagATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAG
tttcgacaggttatgacttaccgcttaagtagttattttttcttttcggaatcagATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAGAAGTACGTCGAGATGATGAAAGCTGAGAACGTCTCCAGAGCGGTATTGG
gacttac putative branch site (score: 16)
ttattttttcttttc putative PPT
ttaagtagttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcatgtggcgatactgcggagtggttgctacttcgctattccttttcgacaggttatgacttaccgcttaagtagttattttttcttttcggaatcagATATACGTTTTCTTCCCTAACGATGACAAGGTGGGAATGAAACACATAAAGAAGTACGTCGAGATGATGAAAGCTGAGAACGTCTCCAGAGCGGTATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- -catgtgg
- - - - - - atactgc
- - - - - - - - - - - - - -tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccgct