Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatattcaacttctaaataacttttttcttttctctagatattatatcactgaatcatttattgcatattgaattgacatgtcaaatctactaatttcagGCCCATCTCGTATCCTATGTGTATCAAGTTATCAAGAAGATGGGGAATAATATGGTGTGGATATAGCTATTGGACATGTTAATTATCCACATGATAATAT

Basic information

species Oryza sativa
transcript LOC_Os01g58890.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55411294|gb|CV723670.1|CV723670
EST:     ACCTCGTCGACCTCGCCCGCTTCGCCGTCACCGAGCACAACAAGAAGGCC                         GCCCATCTCGTATCCTATGTGTATCAAGTTATCAAGAAGATGGGGAATAAT
genomic: ACCTCGTCGACCTCGCCCGCTTCGCCGTCACCGAGCACAACAAGAAGGCCgtaagcgccc ... ctaatttcagGCCCATCTCGTATCCTATGTGTATCAAGTTATCAAGAAGATGGGGAATAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcactgaatcatttattgcatattgaattgacatgtcaaatctactaatttcagGCCCATCTCGTATCCTATGTGTATCAAGTTATCAAGAAGATGGGGAATAATATGGTGTGGATATAGCTATTGGACATGTTAATTATCCACATGATAATAT
                                           tactaat  putative branch site (score: 1)
           atttattgcatatt  TA-rich tract