1 5' 3' | 2 5' 3' | 3 5' 3' |
ACTTTTTTAACCCTCCTCCGATAATGAAATTGATTGAAATCATACGTGGGGCTGATACATCAGAAGAGGTTTTCACTAAAGTCAAATCTTTTTCTGAAAGgtaactgaaagctttgtgtttacaccttctgttaggcctagtactccaattctatttctgatgtacacaacttcagaaaacatgtccaatgttatgtaac...
species | Oryza sativa |
transcript | LOC_Os01g58380.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTGATACATCAGAAGAGGTTTTCACTAAAGTCAAATCTTTTTCTGAAAG GCTTGGGAAGACGGTAATATGCTCACAAGACTACCCTGGTTTCATCGTGAAEST: gi|86596178|gb|CI266681.1|CI266681
genomic: GCTGATACATCAGAAGAGGTTTTCACTAAAGTCAAATCTTTTTCTGAAAGgtaactgaaa ... aaccttgcagGCTTGGGAAGACGGTAATATGCTCACAAGACTACCCTGGTTTCATCGTGAA
EST: GCTGATACATCTGAAGAGGTTTTCACTAAAGTCAAATCTTTTTCTGAAAG GCTTGGGAAGACGGTAATATGCTCACAAGACTACCCTGGTTTCATCGTGAAEST: gi|86855103|gb|CI263170.1|CI263170
genomic: GCTGATACATCAGAAGAGGTTTTCACTAAAGTCAAATCTTTTTCTGAAAGgtaactgaaa ... aaccttgcagGCTTGGGAAGACGGTAATATGCTCACAAGACTACCCTGGTTTCATCGTGAA
EST: TTCACTAAAGTCAAATCTTTTTCTGAAAG GCTTGGGAAGACGGTAATATGCTCACAAGACTACCCTGGTTTCATCGTGAAEST: gi|33675330|gb|CF303569.1|CF303569
genomic: TTCACTAAAGTCAAATCTTTTTCTGAAAGgtaactgaaa ... aaccttgcagGCTTGGGAAGACGGTAATATGCTCACAAGACTACCCTGGTTTCATCGTGAA
EST: GCTGATTCATCAGAAGAGGTTTTCACTAAAGTCAAATCTTTTTCTGAAAG GCTTGGGAAGACGGTAATATGCTCACAAGACTACCCTGGTTTCATCGTGAAEST: gi|87020245|gb|CI261109.1|CI261109
genomic: GCTGATACATCAGAAGAGGTTTTCACTAAAGTCAAATCTTTTTCTGAAAGgtaactgaaa ... aaccttgcagGCTTGGGAAGACGGTAATATGCTCACAAGACTACCCTGGTTTCATCGTGAA
EST: GTTTTCACTAAAGTCAAATCTTTTTCTGAAAG GCTTGGGAAGACGGTAATATGCTCACAAGACTACCCTGGTTTCATCGTGAA
genomic: GTTTTCACTAAAGTCAAATCTTTTTCTGAAAGgtaactgaaa ... aaccttgcagGCTTGGGAAGACGGTAATATGCTCACAAGACTACCCTGGTTTCATCGTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTTTTTAACCCTCCTCCGATAATGAAATTGATTGAAATCATACGTGGGGCTGATACATCAGAAGAGGTTTTCACTAAAGTCAAATCTTTTTCTGAAAGgtaactgaaagctttgtgtttacaccttctgttaggcctagtactccaattctatttctgatgtacacaacttcagaaaacatgtccaatgttatgtaac
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaca