1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgagtttctatatacacagaaaatcattgctttatagctccgttgtgctcaatgctatgagtttttctggatagacttataatggagctatcttcttcagGGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACATTTGACAAATTGCTAACAGTTCCTGAGCAAGATAAGTGGGTCTATACTG
species | Oryza sativa |
transcript | LOC_Os01g58114.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACAEST: gi|29642895|gb|CB647902.1|CB647902
genomic: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgtttca ... tcttcttcagGGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACA
EST: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACAEST: gi|3107375|gb|D43115.1|D43115
genomic: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgtttca ... tcttcttcagGGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACA
EST: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACAEST: gi|218493202|gb|FG958053.1|FG958053
genomic: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgtttca ... tcttcttcagGGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACA
EST: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACAEST: gi|58594574|gb|CF992882.1|CF992882
genomic: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgtttca ... tcttcttcagGGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACA
EST: TGCTGCCAACATGTGGAAAGAAGCCCTTAACAAAGCGGCTTGGAACTAAG GGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACAEST: gi|29643384|gb|CB648391.1|CB648391
genomic: TGCTGCCAACATGTGGAAAGAAGCCCTTAACAAA-CGGCTTGGAACTAAGgtttgtttca ... tcttcttcagGGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACA
EST: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACAEST: gi|29676478|gb|CB672753.1|CB672753
genomic: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgtttca ... tcttcttcagGGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACA
EST: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACAEST: gi|87006893|gb|CI275201.1|CI275201
genomic: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgtttca ... tcttcttcagGGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACA
EST: TGCTGCCAACATGTGGAAAGAAGCCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACAEST: gi|29678212|gb|CB674487.1|CB674487
genomic: TGCTGCCAACATGTGGAAAGAAG-CCCTTAACAAACGGCTTGGAACTAAGgtttgtttca ... tcttcttcagGGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACA
EST: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACAEST: gi|25797971|gb|CA753932.1|CA753932
genomic: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgtttca ... tcttcttcagGGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACA
EST: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGATCTACCTGAAATCAT
genomic: ATGCTGCCAACATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgtttca ... tcttcttcagGGTCTTGATCTACCTGAAATCAT
tgctcaatgctatgagtttttctggatagacttataatggagctatcttcttcagGGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACATTTGACAAATTGCTAACAGTTCCTGAGCAAGATAAGTGGGTCTATACTG
ctatcttcttc CT-rich tract
acttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagtttctatatacacagaaaatcattgctttatagctccgttgtgctcaatgctatgagtttttctggatagacttataatggagctatcttcttcagGGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACATTTGACAAATTGCTAACAGTTCCTGAGCAAGATAAGTGGGTCTATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - cagaaaa
- - - - - - - - - - - - - ttgcttt
- - - - - - - - - - - - - - - - - - - - - ttgtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggagct