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...ttctatcctggttaaatatattgtgtatgttgcagtatggtactcctttctgaggagaatttcatcatgtgggttatcttcatttttcttggatgaacagGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGTGAGACAACAGGTCTTGGTTTAGATCAAGTGAAGTTTTGGTTTCAGAAT
species | Oryza sativa |
transcript | LOC_Os01g57890.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGG GTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGEST: gi|88726288|gb|CI749943.1|CI749943
genomic: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGgtatgtttct ... ggatgaacagGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAG
EST: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGG GTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGEST: gi|88721836|gb|CI743348.1|CI743348
genomic: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGgtatgtttct ... ggatgaacagGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAG
EST: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGG GTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGEST: gi|88720267|gb|CI743566.1|CI743566
genomic: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGgtatgtttct ... ggatgaacagGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAG
EST: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGG GTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGEST: gi|88729603|gb|CI751406.1|CI751406
genomic: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGgtatgtttct ... ggatgaacagGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAG
EST: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGG GTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGEST: gi|88730931|gb|CI754544.1|CI754544
genomic: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGgtatgtttct ... ggatgaacagGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAG
EST: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGG GTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTEST: gi|88728831|gb|CI752341.1|CI752341
genomic: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGgtatgtttct ... ggatgaacagGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCT
EST: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGG GTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGEST: gi|88719773|gb|CI743283.1|CI743283
genomic: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGgtatgtttct ... ggatgaacagGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAG
EST: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGG GTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAG
genomic: AAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGgtatgtttct ... ggatgaacagGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAG
ctttctgaggagaatttcatcatgtgggttatcttcatttttcttggatgaacagGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGTGAGACAACAGGTCTTGGTTTAGATCAAGTGAAGTTTTGGTTTCAGAAT
tcttcatttttcttg CT-rich tract
ttatcttcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctatcctggttaaatatattgtgtatgttgcagtatggtactcctttctgaggagaatttcatcatgtgggttatcttcatttttcttggatgaacagGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGTGAGACAACAGGTCTTGGTTTAGATCAAGTGAAGTTTTGGTTTCAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - atgttgc
- - - - - - - - - - - - - - - - - - -tggtact
- - - - - - - - - - - - - - - - - - - - - - -ctttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgg