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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatgagttttaattaattagatgaaaaatatgtacaatacaaatccatgtgattgttactaacaaacttcttctatagGATGCAATACATGGATGCTAAGAAGAAAAAAGAACCCATCGACTTCTTGGATCCAACTCGGATCTGCCAAACACAGCATACCGTGACGCTAGCACCAGGG

Basic information

species Oryza sativa
transcript LOC_Os01g57160.1
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaatatgtacaatacaaatccatgtgattgttactaacaaacttcttctatagGATGCAATACATGGATGCTAAGAAGAAAAAAGAACCCATCGACTTCTTGGATCCAACTCGGATCTGCCAAACACAGCATACCGTGACGCTAGCACCAGGG
                                 tactaac  putative branch site (score: 0)
                                           cttcttctat  putative PPT
            aatacaaat  TA-rich tract