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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttggtccccttcaaatgaaatgtaagatgtttgttttcaacatttctggttattaactcaacagTTCTTGAAAAATGTATCCATACAGAGCGAACATGGAAAAGATTCATTGCTACCTGATGATCACACTATGAAAATTATGGAGCCAGAAAGATTGCAGGAAG

Basic information

species Oryza sativa
transcript LOC_Os01g56960.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56980.1 (Oryza sativa), 3'ss of exon 29
lower sequence: GRMZM2G057140_T01 (Zea mays), 3'ss of exon 27
gtgagtttggtccccttcaaatgaaatgtaagatgtttgttttcaacatttctggttattaac-tcaacagTT-CTTGAAAA----------ATGTATCCATACAGAGCGAACATGGAAAAGATTCATTGCTACCTGATGATCACACTATGAAAATTATGGAGCCAGAAAGATTGCAGGAAG---------------------------
       |  | |  ||||||||   || ||| |||| |||| ||| ||||||  | | | || | || | || | |||  |          ||||| |||| ||| | | |   || ||||| || ||||| |||||||| ||||| |||   ||||||||||||||||||||||||||||                           
------gttattcatttcaaatgct-tggaaggtgttcgttt-caatatttctaatgacttacatgaatatttgcatgatcacactattcttatgtacccatgcagGGTGGA---GGCAAAGAATCTTTGCTGCCTGATGACCACACAATGCCGATTATGGAGCCAGAAAGATTGCAGGAAGTTGGATCGTATATCACCTTAGACAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaatgaaatgtaagatgtttgttttcaacatttctggttattaactcaacagTTCTTGAAAAATGTATCCATACAGAGCGAACATGGAAAAGATTCATTGCTACCTGATGATCACACTATGAAAATTATGGAGCCAGAAAGATTGCAGGAAG
                                         tattaac  putative branch site (score: 1)
                                        ttattaact  TA-rich tract