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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggattcctgatggtaacttactagaaaatttggtcacagcaattctcttttcggagctggaaactctaaattgcttagtagctcagtttgtaatgcattctgcttagattctctattccattgactgacaaatcactcatcactaattgttatttgtgcagGTACATTCTAGTTTACCCTCAAGGATGTGATGTCTCCAATCACTTGTCATTATTTCTATGTGTTGCTAATCATGACAAACTTCTCCCAG

Basic information

species Oryza sativa
transcript LOC_Os01g56800.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688238|gb|CK076925.1|CK076925
EST:     NNNNNNNGAGAAATGAAAAGCGAACCATTTGAAGCTGGTGGTTACAAATG                         GTACATTCTAGTTTACCCTCAAGGATGTGATGTCTCCAATCACTTGTCATT
genomic: AAAAAAAGAGAAATGAAAAGCGAACCATTTGAAGCTGGTGGTTACAAATGgtaggattcc ... atttgtgcagGTACATTCTAGTTTACCCTCAAGGATGTGATGTCTCCAATCACTTGTCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattctctattccattgactgacaaatcactcatcactaattgttatttgtgcagGTACATTCTAGTTTACCCTCAAGGATGTGATGTCTCCAATCACTTGTCATTATTTCTATGTGTTGCTAATCATGACAAACTTCTCCCAG
                                  cactaat  putative branch site (score: 2)
                                   actaattgttattt  TA-rich tract