1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cagatatagaggccgaattcttatccattatcttaagaaaatatattcatgtctgggattgggctgtcataaccatggttgttaccttgttgggttgcagATGAATCGGCTGCTTCAGCGAATAAACAAAAGGGTTGCTCAATCCCAGACCTTCCAGAGGTATGCCACATAAATTTTGAAGATGGGGGGCTTATGTTGCA
species | Oryza sativa |
transcript | LOC_Os01g56730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCCATCCAGCGTAACCAGCAGCGGCGTCGCCGGAAAATCCTTGCCCGGA ATGAATCGGCTGCTTCAGCGAATEST: gi|88299532|gb|CI574645.1|CI574645
genomic: GTCCATCCAGCGTAACCAGCAGCGGCGTCGCCGGAAAATCCTTGCCCGGAgtaagcctcc ... tgggttgcagATGAATCGGCTGCTTCAGCGAAT
EST: GTCCATCCAGCGTGACCAGCAGCGGCGTCGCCGGAAAATCCTTGCCCGGA ATGAATCGGCTGCTTCAGCGAATAAACAAAAGGGTTGCTCAATCCCAGACC
genomic: GTCCATCCAGCGTAACCAGCAGCGGCGTCGCCGGAAAATCCTTGCCCGGAgtaagcctcc ... tgggttgcagATGAATCGGCTGCTTCAGCGAATAAACAAAAGGGTTGCTCAATCCCAGACC
ttcatgtctgggattgggctgtcataaccatggttgttaccttgttgggttgcagATGAATCGGCTGCTTCAGCGAATAAACAAAAGGGTTGCTCAATCCCAGACCTTCCAGAGGTATGCCACATAAATTTTGAAGATGGGGGGCTTATGTTGCA
tcataac putative branch site (score: 1)
ccttgtt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagatatagaggccgaattcttatccattatcttaagaaaatatattcatgtctgggattgggctgtcataaccatggttgttaccttgttgggttgcagATGAATCGGCTGCTTCAGCGAATAAACAAAAGGGTTGCTCAATCCCAGACCTTCCAGAGGTATGCCACATAAATTTTGAAGATGGGGGGCTTATGTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggtt