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TGCTGCAGATGATTCATCTCTCTTGGAGAAAGATCCTATTGCAAAAATAATTTTACCACTCAAACCGCTTGAATTGCAGAGTATGCTGCTTGCCATGGCGgtatgtattgtgagctaaaaattttatctgctgatactgataccatatcattttcttttctttcatctatctttgtacattctagccctcctctttgaca...
species | Oryza sativa |
transcript | LOC_Os01g56640.3 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTTTACCACTCAAACCGCTTGAATTGCAGAGTATGCTGCTTGCCATGGCG CGTACTTTCCCAAGGACTCTAGAAGCTCTTGTCCTCAACATGCTTGGACCAEST: gi|4715475|gb|AU056592.1|AU056592
genomic: TTTTACCACTCAAACCGCTTGAATTGCAGAGTATGCTGCTTGCCATGGCGgtatgtattg ... tgcttttcagCGTACTTTCCCAAGGACTCTAGAAGCTCTTGTCCTCAACATGCTTGGACCA
EST: TACCACTTCAAACCGCTTGGAATTGCAGAGTATGCTGCTTGCCATGGGCG CGTACTTTCCCAAGGACEST: gi|4715422|gb|AU056539.1|AU056539
genomic: TACCACT-CAAACCGCTTG-AATTGCAGAGTATGCTGCTTGCCATGG-CGgtatgtattg ... tgcttttcagCGTACTTTCCCAAGGAC
EST: TTTACCACTCAAACCGCTTGGAATTGCAGAGTATGCTGCTTGCCATGGCG CGTACTTTCCCAAGGACTCTAGAAGCTCTTGTCCTCAACATGCTTGGACCAEST: gi|33680312|gb|CF308551.1|CF308551
genomic: TTTACCACTCAAACCGCTTG-AATTGCAGAGTATGCTGCTTGCCATGGCGgtatgtattg ... tgcttttcagCGTACTTTCCCAAGGACTCTAGAAGCTCTTGTCCTCAACATGCTTGGACCA
EST: TTTTACCACTCAAACCGCTTGAATTGCAGAGTATGCTGCTTGCCGTGGCG CGTACTTTCCCAAGGACTCTAGAAGCTCTTGTCCTCAACATGCTTGGAEST: gi|86502504|gb|CI145137.1|CI145137
genomic: TTTTACCACTCAAACCGCTTGAATTGCAGAGTATGCTGCTTGCCATGGCGgtatgtattg ... tgcttttcagCGTACTTTCCCAAGGACTCTAGAAGCTCTTGTCCTCAACATGCTTGGA
EST: TTTTACCACTCAAACCGCTTGAATTGCAGAGTATGCTGCTTGCCATGGCG CGTACTTTCCCAAGGACTCTAGAAGCTCTTGTCCTCAACATGCTTGGACCCEST: gi|3766648|gb|AU030758.1|AU030758
genomic: TTTTACCACTCAAACCGCTTGAATTGCAGAGTATGCTGCTTGCCATGGCGgtatgtattg ... tgcttttcagCGTACTTTCCCAAGGACTCTAGAAGCTCTTGTCCTCAACATGCTTGGACCA
EST: CCGCTTGAATTGCAGGAGTATGCTGCTTGCCATGGCG CGTACTTNCCCAAAGGACTCTAGAAGCTCTTGTCCTCAACATGCTTGGACC
genomic: CCGCTTGAATTGCA-GAGTATGCTGCTTGCCATGGCGgtatgtattg ... tgcttttcagCGTACTTTCCC-AAGGACTCTAGAAGCTCTTGTCCTCAACATGCTTGGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGCAGATGATTCATCTCTCTTGGAGAAAGATCCTATTGCAAAAATAATTTTACCACTCAAACCGCTTGAATTGCAGAGTATGCTGCTTGCCATGGCGgtatgtattgtgagctaaaaattttatctgctgatactgataccatatcattttcttttctttcatctatctttgtacattctagccctcctctttgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccctcc