1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggtctaagagcaccgtgtactggcatggtgtaagaaaattgttgtttttcacttttatattctctatatttctcatattgaatgatttttcctattgcagAAAACCAATCTTCTTACAAAAGTCAGTTGCAAATTTATGCTCAGAAGAAGGGCAAACTGTTGCCTTCGTACCAAACAATTCGGGAAGGTCCAGGTCATGC
species | Oryza sativa |
transcript | LOC_Os01g56520.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCCCCTCCCTCCG AAAACCAATCTTCTTACAAAAGTCAGTTGCAAATTTATGCTCAGAAGAAGG
genomic: CTCCCCCTCCCTCCGgtgagtgcca ... cctattgcagAAAACCAATCTTCTTACAAAAGTCAGTTGCAAATTTATGCTCAGAAGAAGG
ttttcacttttatattctctatatttctcatattgaatgatttttcctattgcagAAAACCAATCTTCTTACAAAAGTCAGTTGCAAATTTATGCTCAGAAGAAGGGCAAACTGTTGCCTTCGTACCAAACAATTCGGGAAGGTCCAGGTCATGC
tttttcctatt CT-rich tract
ttttatattctctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtctaagagcaccgtgtactggcatggtgtaagaaaattgttgtttttcacttttatattctctatatttctcatattgaatgatttttcctattgcagAAAACCAATCTTCTTACAAAAGTCAGTTGCAAATTTATGCTCAGAAGAAGGGCAAACTGTTGCCTTCGTACCAAACAATTCGGGAAGGTCCAGGTCATGC
- - - - - - ccgtgta
- - - - - - - - - - -ggcatgg
- - - - - - - - - - - - - - -gtaagaaa
- - - - - - - - - - - - - - - - - - -attgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaatg