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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataattacacttgggctcaagattggccatttaagctcacaggaccaaacattgttgttgctagtatatttgtagtggtagcaattttggactggtagaatctattatgatttctttcccatttctatggccacagGCATACGTAGATATGATCAATTCTGGCAGAGAGGATGAAGTGAAATGGGGAAACGCACTTGGTTTCATAATCCTCCCGTTCTTCATAGGCATGCACAAGG

Basic information

species Oryza sativa
transcript LOC_Os01g56370.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58679775|gb|CK068462.1|CK068462
EST:     GTTTGAGATCGATCCTCCTTGTCAATTTGAGGCCAACCACAAGCCTGCAT                         GCATACGTAGATATGATCAATTCTGGCAGAGAGGATGAAGTGAAATGGGGA
genomic: GTTTGAGAACGATCCTCCTTGTCAATTTGAGGCCAACCACAAGCCTGCATgtaataatta ... atggccacagGCATACGTAGATATGATCAATTCTGGCAGAGAGGATGAAGTGAAATGGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattttggactggtagaatctattatgatttctttcccatttctatggccacagGCATACGTAGATATGATCAATTCTGGCAGAGAGGATGAAGTGAAATGGGGAAACGCACTTGGTTTCATAATCCTCCCGTTCTTCATAGGCATGCACAAGG
                             tttctttcccatttct  CT-rich tract
                 aatctattatgattt  TA-rich tract