1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTCAAGCGGGTGAAGCACGGGGAGTTCCAGCGGAAGCGCATCGTGCACCGGGGGCTTAGCCTTGATGACGTCAAGCTCGTCAAGAACGCCATGAACTGCgtaagcgatgttttctttagttcttagagagcctgtttgtttgagtatatagcggcatataaattgcagaaaactttaaaattaaaattttagaattgat...
species | Oryza sativa |
transcript | LOC_Os01g56360.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGGGCTTAGCCTTGATGACGTCAAGCTCGTCAAGAACGCCATGAACTGC ACGGTCAATGATGTGCTGGTTGGGATCACGTACTCTGCACTGTCGCGCTATEST: gi|30228254|gb|CB966145.1|CB966145
genomic: GGGGGCTTAGCCTTGATGACGTCAAGCTCGTCAAGAACGCCATGAACTGCgtaagcgatg ... actctcgcagACGGTCAATGATGTGCTGGTTGGGATCACGTACTCTGCACTGTCGCGCTAT
EST: GGGGGCTTAGCCTTGATGACGTCAAGCTCGTCAAGAACGCCATGAACTGC ACGGTCAATGATGTGCTGGTTGGGATCACGTACTCTGCACTGTCGCGCTATEST: gi|163927643|gb|EG712439.1|EG712439
genomic: GGGGGCTTAGCCTTGATGACGTCAAGCTCGTCAAGAACGCCATGAACTGCgtaagcgatg ... actctcgcagACGGTCAATGATGTGCTGGTTGGGATCACGTACTCTGCACTGTCGCGCTAT
EST: GGGGGCTTAGCCTTGATGACGTCAAGCTCGTCAAGAACGCCATGAACTGC ACGGTCAATGATGTGCTGGTTGGGATCACGTACTCTGCACTGTCGCGCTATEST: gi|30228465|gb|CB966355.1|CB966355
genomic: GGGGGCTTAGCCTTGATGACGTCAAGCTCGTCAAGAACGCCATGAACTGCgtaagcgatg ... actctcgcagACGGTCAATGATGTGCTGGTTGGGATCACGTACTCTGCACTGTCGCGCTAT
EST: GGGGGCTTAGCCTTGATGACGTCAAGCTCGTCAAGAACGCCATGAACTGC ACGGTCAATGATGTGCTGGTTGGGATCACGTACTCTGCACTGTCGCGCTAT
genomic: GGGGGCTTAGCCTTGATGACGTCAAGCTCGTCAAGAACGCCATGAACTGCgtaagcgatg ... actctcgcagACGGTCAATGATGTGCTGGTTGGGATCACGTACTCTGCACTGTCGCGCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCAAGCGGGTGAAGCACGGGGAGTTCCAGCGGAAGCGCATCGTGCACCGGGGGCTTAGCCTTGATGACGTCAAGCTCGTCAAGAACGCCATGAACTGCgtaagcgatgttttctttagttcttagagagcctgtttgtttgagtatatagcggcatataaattgcagaaaactttaaaattaaaattttagaattgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC