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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttccagatgatctagcttcaaatgtgcagtttttcgattgttggaataagagcgttttcatgataatacaataaatcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATATTGGTTGCATGG

Basic information

species Oryza sativa
transcript LOC_Os01g55570.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33813231|gb|CF332506.1|CF332506
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88515407|gb|CI443061.1|CI443061
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88663053|gb|CI477731.1|CI477731
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGGTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|58030284|gb|CX727827.1|CX727827
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTTTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88991906|gb|CI035044.1|CI035044
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|33666135|gb|CF297102.1|CF297102
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88514875|gb|CI442529.1|CI442529
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88502246|gb|CI429752.1|CI429752
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88286237|gb|CI522537.1|CI522537
EST:     TANGATTTNCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88988709|gb|CI039128.1|CI039128
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88977491|gb|CI025227.1|CI025227
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|58590453|gb|CF988761.1|CF988761
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88661619|gb|CI457276.1|CI457276
EST:     TTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88979638|gb|CI026024.1|CI026024
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88471188|gb|CI408459.1|CI408459
EST:     TAGGATTTGCAGGGATTGCCCCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|699911|gb|D46202.1|D46202
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|33818515|gb|CF335088.1|CF335088
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATTTTGTAGAG                         GTCATCGACAAGCTTCCTGTTTTCCCTTTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|33824042|gb|CF337834.1|CF337834
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88663661|gb|CI484642.1|CI484642
EST:     GCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: GCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88463041|gb|CI522152.1|CI522152
EST:     GGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: GGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|3768522|gb|AU032549.1|AU032549
EST:     AGGATTTGCCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGNCAT
genomic: AGGATTTG-CAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGG-CAT
EST: gi|88963183|gb|CI026856.1|CI026856
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88662023|gb|CI462779.1|CI462779
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88517883|gb|CI444859.1|CI444859
EST:     GCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: GCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88662192|gb|CI466141.1|CI466141
EST:     TAGGATTTGCAGGGATTNCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcgattgttggaataagagcgttttcatgataatacaataaatcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATATTGGTTGCATGG
                        ttttcatgataataca  TA-rich tract