1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGCTCTCTCTGCGTGGGTGTTCTGCAGCGCCAATCCTGGATCATCATCGTTTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGgtatatacactttgggtagtatcatggtgggatttccagtcttttcgacgtgtcgtgtcaccggatccatttctttgttgccgttgttgttgttgctgtttggttggttgccgagaag
species | Oryza sativa |
transcript | LOC_Os01g55520.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGCTTCTGCACACGTCGCTCGAGGCCGAAGAAAGCTGCGTCCTTTACAG CTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGCEST: gi|88693904|gb|CI737942.1|CI737942
genomic: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGgtatatacac ... tgccgagaagCTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGC
EST: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAG CTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGCEST: gi|66923711|gb|CX110559.1|CX110559
genomic: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGgtatatacac ... tgccgagaagCTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGC
EST: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGGGTCCTTTACAG CTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGCEST: gi|88395907|gb|CI593109.1|CI593109
genomic: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGgtatatacac ... tgccgagaagCTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGC
EST: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAG CTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGCEST: gi|88300627|gb|CI587431.1|CI587431
genomic: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGgtatatacac ... tgccgagaagCTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGC
EST: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAG CTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGCEST: gi|88406812|gb|CI604006.1|CI604006
genomic: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGgtatatacac ... tgccgagaagCTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGC
EST: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTAAAG CTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGCEST: gi|88718166|gb|CI741676.1|CI741676
genomic: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGgtatatacac ... tgccgagaagCTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGC
EST: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAG CTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGCEST: gi|88370681|gb|CI592447.1|CI592447
genomic: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGgtatatacac ... tgccgagaagCTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGC
EST: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAG CTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGCEST: gi|88294896|gb|CI604768.1|CI604768
genomic: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGgtatatacac ... tgccgagaagCTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGC
EST: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAG CTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGC
genomic: TTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGgtatatacac ... tgccgagaagCTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTCTCTCTGCGTGGGTGTTCTGCAGCGCCAATCCTGGATCATCATCGTTTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGgtatatacactttgggtagtatcatggtgggatttccagtcttttcgacgtgtcgtgtcaccggatccatttctttgttgccgttgttgttgttgctgtttggttggttgccgagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC