Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|218492722|gb|FG955669.1|FG955669EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|33813299|gb|CF332536.1|CF332536EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|88337647|gb|CI632149.1|CI632149EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|88345501|gb|CI629762.1|CI629762EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCACGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|218486024|gb|FG960390.1|FG960390EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|58588527|gb|CF986835.1|CF986835EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|25797852|gb|CA753813.1|CA753813EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|66913285|gb|CX100133.1|CX100133EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|88581174|gb|CI698148.1|CI698148EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|88371819|gb|CI680929.1|CI680929EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|88421270|gb|CI569115.1|CI569115EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCACAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|58689578|gb|CK078265.1|CK078265EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|44674636|gb|CR288070.1|CR288070EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|88422118|gb|CI688914.1|CI688914EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|33816772|gb|CF334220.1|CF334220EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACA- T----GGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|58688025|gb|CK076712.1|CK076712EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|88350573|gb|CI630091.1|CI630091EST: CTACGCGGATCTGCATCGGCCGGAGCGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: CTACGCGGATCTGCATCGGCCGGAG-GCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|88337789|gb|CI632291.1|CI632291EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGGTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|88348488|gb|CI629977.1|CI629977EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|218494237|gb|FG952757.1|FG952757EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
EST:
gi|88766293|gb|CI775383.1|CI775383EST: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT TGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
genomic: ACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
73 (upstream exon),
63 (downstream exon)
Score:
5CCGCGCGGCTCTGCGAGGCGGGGTTCTTCACCGATTACGCCAACCCCGCCACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATgtgagacccc ... ttatcttcagTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCATGTTAAAAGTGGAGATGCTGATGGTTACCCAACGACTGAAGATTTGTCA
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