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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGCGGTGGGCGTGGGAGGAGGGCGTCGGCCTCACCGCCTCCAACGATTCCTTCTTCTTCGACCCCGCCATCCGCGACTACTTCAAAGTCTACCTCAAGgttagttagttaaaagttaatcgcatcgagcccggagcttagctttccgccctactatttgctaatcaagccgccatggattgattaaggggagatagctagtgccatagagtgtcggtggctttagtacagtgattaattaattaatctagttgctttttactgtgcgcgcag

Basic information

species Oryza sativa
transcript LOC_Os01g54300.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54300.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G140201_T01 (Zea mays), 5'ss of exon 2
CGTGCGGTGGGCGTGGGAGGAGGGCGTCGGCCTCACCGCCTCCAACGATTCCTTCTTCTTCGACCCCGCCATCCGCGACTACTTCAAAGTCTACCTCAAGgttagttagttaaaagttaatcgcatcgagcccggagcttagctttccgccctactatttgctaatcaagccgccatggattgattaaggggagatagctagtgccatagagtgtcggtggctttagtacagtgattaattaattaatctagttgctttttactgtgcgcgcag
|||||||||||||||||| |||||||||||| |  |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| || |         |||||| |   ||     |||  | | |  |||        ||  |    |||     |     |   || | || |        ||||                                                                     
CGTGCGGTGGGCGTGGGAAGAGGGCGTCGGCATGTCCGCCTCCAACGATTCCTTCTTCTACGATCCAGCCATCCGCGACTACTTCAAAGTCTACCTCAAGgtcagctcagcccccattaatctcgg-gaaattagagtgtcggtgaccgat------ttcaccggccaaattaaccccactc--ttgacggaaacctttgggtgcag-------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2431471|gb|C73891.1|C73891
EST:     CTTCAAAGTCTACCTCAAG                         ACGTTGCTGATGAGGAAGAATCACTTGACGGGGTTGGAGTACAGGGACGAC
genomic: CTTCAAAGTCTACCTCAAGgttagttagt ... gtgcgcgcagACGTTGCTGATGAGGAAGAATCACTTGACGGGGTTGGAGTACAGGGACGAC
EST: gi|58613302|gb|CK041014.1|CK041014
EST:     CCTTCTTCTTCGACCCCGCCATCCGCGACTACTTCAAAGTCTACCTCACG                         ACGTTGCTGACGAGGAAGAATCACTTGACGGGGTTGGAGTACAGGGACGAC
genomic: CCTTCTTCTTCGACCCCGCCATCCGCGACTACTTCAAAGTCTACCTCAAGgttagttagt ... gtgcgcgcagACGTTGCTGATGAGGAAGAATCACTTGACGGGGTTGGAGTACAGGGACGAC