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gtacgccgcgcgctccgccgtgctccgagacctagcggctgcttctgctttgcttccgagtccctaactttcctccctgttgtttggcttcgcagGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCTCCGACTCAACTGCAGCGTGGCTGAAGCGACTGCCTCCGGCGACGAGGCG
species | Oryza sativa |
transcript | LOC_Os01g54020.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCGCACGCTCCTCTCCCACATTCTCCACCGCCCGCCGC-GCTCCTCGC GTCGAGGGGTGGTGGGEST: gi|88341213|gb|CI639970.1|CI639970
genomic: AGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGCgtacgccgcg ... ggcttcgcagGTCGAGGGGTGGTGGG
EST: AGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGC GTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCTEST: gi|88341927|gb|CI644264.1|CI644264
genomic: AGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGCgtacgccgcg ... ggcttcgcagGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCT
EST: AGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGC GTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCTEST: gi|88407431|gb|CI586272.1|CI586272
genomic: AGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGCgtacgccgcg ... ggcttcgcagGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCT
EST: AGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGC GTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCTEST: gi|88335142|gb|CI658149.1|CI658149
genomic: AGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGCgtacgccgcg ... ggcttcgcagGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCT
EST: AGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGC GTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCTEST: gi|44667170|gb|CR280604.1|CR280604
genomic: AGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGCgtacgccgcg ... ggcttcgcagGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCT
EST: AGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGC GTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCTGTCCCGCCTCCGCACTCTEST: gi|88365129|gb|CI616548.1|CI616548
genomic: AGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGCgtacgccgcg ... ggcttcgcagGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCT
EST: AGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGC GTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCT
genomic: AGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGCgtacgccgcg ... ggcttcgcagGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCT
gcttctgctttgcttccgagtccctaactttcctccctgttgtttggcttcgcagGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCTCCGACTCAACTGCAGCGTGGCTGAAGCGACTGCCTCCGGCGACGAGGCG
ccctaac putative branch site (score: 9)
taacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgccgcgcgctccgccgtgctccgagacctagcggctgcttctgctttgcttccgagtccctaactttcctccctgttgtttggcttcgcagGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCTCCGACTCAACTGCAGCGTGGCTGAAGCGACTGCCTCCGGCGACGAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC