1 5' 3' | 2 5' 3' |
...atttcaagattgtttctttttttttgggagatgaagaaatggaagagaaatgatcactaaaactatgaaaaatgcatgattgcaaatgtggcttttgcagGGCATTGCCTCGGAGGCAAGGTTGGCATCTGCTACGGCCGCAACGCCGATGACCTGCCGGCGCCGGACAAGGTGGTGCAGCTCATCCAGCAGCAGTCGCT
species | Oryza sativa |
transcript | LOC_Os01g53750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
agaaatgatcactaaaactatgaaaaatgcatgattgcaaatgtggcttttgcagGGCATTGCCTCGGAGGCAAGGTTGGCATCTGCTACGGCCGCAACGCCGATGACCTGCCGGCGCCGGACAAGGTGGTGCAGCTCATCCAGCAGCAGTCGCT
cactaaa putative branch site (score: 10)
cttttgc putative PPT
taaaactatgaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcaagattgtttctttttttttgggagatgaagaaatggaagagaaatgatcactaaaactatgaaaaatgcatgattgcaaatgtggcttttgcagGGCATTGCCTCGGAGGCAAGGTTGGCATCTGCTACGGCCGCAACGCCGATGACCTGCCGGCGCCGGACAAGGTGGTGCAGCTCATCCAGCAGCAGTCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - tgtttct
- - - - - - - - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - aagagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaatg