Sequence
atgc intronic sequence ATGC exonic sequence...acggattcattcatgccgcgtgcgaatcctgcacactgtataactgcatgcgaatcatgtgtgctaggcatgtaacatactccgtatttctttgtttcagATAGTTGCGTACAGGGTTCGCTAA
Basic information
species | Oryza sativa |
transcript | LOC_Os01g53740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcatgcgaatcatgtgtgctaggcatgtaacatactccgtatttctttgtttcagATAGTTGCGTACAGGGTTCGCTAA
atgtaac putative branch site (score: 3)
ctccgtatttcttt putative PPT
tatttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acggattcattcatgccgcgtgcgaatcctgcacactgtataactgcatgcgaatcatgtgtgctaggcatgtaacatactccgtatttctttgtttcagATAGTTGCGTACAGGGTTCGCTAA
- - - - -ttcatgc
- - - - - - - - cgcgtgc
- - - - - - - - - - - - - tcctgca
- - - - - - - - - - - - - - - - - - - - - - tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catactc