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...ttttattggtgcaaaaaaacactaaacacaatctgctgttttagtctgttttgtgtgcattatataagctgcccttttgataattgccatgttatttcagATCTTTCTATGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGCAGATAAAGAATTCGCTAAG
species | Oryza sativa |
transcript | LOC_Os01g53560.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGGTTGATGAGAGAGCATTTCAATTCGGGAGTTACAGTTGACATGGACAA ATCTTTCTATGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGCEST: gi|86505425|gb|CI148058.1|CI148058
genomic: TGGTTGATGAGAGAGCATTTCAATTCGGGAGTTACAGTTGACATGGACAAgtaagtaacc ... gttatttcagATCTTTCTATGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGC
EST: TGGTTGATGAGAGAGCATTTCAATTCGGGAGTTACAGTTGACATGGACAA ATCTTTCTATGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGCEST: gi|88508913|gb|CI436419.1|CI436419
genomic: TGGTTGATGAGAGAGCATTTCAATTCGGGAGTTACAGTTGACATGGACAAgtaagtaacc ... gttatttcagATCTTTCTATGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGC
EST: TGGTTGATGAGAGAGCATTTCAATTCGGGAGTTACAGTTGACATGGACAA ATCTTTCTATGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGCEST: gi|88516737|gb|CI442393.1|CI442393
genomic: TGGTTGATGAGAGAGCATTTCAATTCGGGAGTTACAGTTGACATGGACAAgtaagtaacc ... gttatttcagATCTTTCTATGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGC
EST: TGGTTGATGAGAGAGCATTTCAATTCGGGAGTTACAGTTGACATGGACAA ATCTTTCTATGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGCEST: gi|86433513|gb|CI093856.1|CI093856
genomic: TGGTTGATGAGAGAGCATTTCAATTCGGGAGTTACAGTTGACATGGACAAgtaagtaacc ... gttatttcagATCTTTCTATGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGC
EST: TGGTTGATGAGAGAGCATTTCAATTCGGGAGTTACAGTTGACATGGACAA ATCTTTCTATGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGC
genomic: TGGTTGATGAGAGAGCATTTCAATTCGGGAGTTACAGTTGACATGGACAAgtaagtaacc ... gttatttcagATCTTTCTATGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGC
ctgttttgtgtgcattatataagctgcccttttgataattgccatgttatttcagATCTTTCTATGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGCAGATAAAGAATTCGCTAAG
ttttgat putative branch site (score: 1)
ttatttc putative PPT
ttttgataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttattggtgcaaaaaaacactaaacacaatctgctgttttagtctgttttgtgtgcattatataagctgcccttttgataattgccatgttatttcagATCTTTCTATGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGCAGATAAAGAATTCGCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - tggtgca
- - - - - - - aaaaaca
- - - - - - - - - - - - -acacaat
- - - - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatt