1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TATTGCTGAGAAACAGGGTGAGCAGGATGATGCTCCAACTGGAGAGAAGGATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAGgtaatgattttcatctgttctctactctgtctaaattgaggaaactgcactgctattttagaggtttgctgaaataaaaaatttattcttgtgtgtctaa...
species | Oryza sativa |
transcript | LOC_Os01g52390.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATAGCAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAG GAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCTEST: gi|157652089|gb|EX451723.1|EX451723
genomic: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAGgtaatgattt ... tactatctagGAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCT
EST: ATAGCAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAG GAGATGACTCTTGATGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCTEST: gi|427517|gb|D23584.1|D23584
genomic: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAGgtaatgattt ... tactatctagGAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCT
EST: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAG GAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCTEST: gi|427486|gb|D23553.1|D23553
genomic: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAGgtaatgattt ... tactatctagGAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCT
EST: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAG GAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCTEST: gi|55409956|gb|CV722332.1|CV722332
genomic: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAGgtaatgattt ... tactatctagGAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCT
EST: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAG GAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCTEST: gi|29686653|gb|CB682928.1|CB682928
genomic: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAGgtaatgattt ... tactatctagGAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCT
EST: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAG GAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCTEST: gi|218490755|gb|FG964437.1|FG964437
genomic: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAGgtaatgattt ... tactatctagGAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCT
EST: ATAGCAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAG GAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCTEST: gi|29614482|gb|CB619495.1|CB619495
genomic: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAGgtaatgattt ... tactatctagGAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCT
EST: ATAGCAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAG GAGATGCCTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCTEST: gi|300216202|gb|HO087987.1|HO087987
genomic: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAGgtaatgattt ... tactatctagGAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCT
EST: ATAGCAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAG GAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCTEST: gi|38469519|gb|CF953650.1|CF953650
genomic: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAGgtaatgattt ... tactatctagGAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCT
EST: ATAGCAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAG GAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCTEST: gi|218486771|gb|FG956353.1|FG956353
genomic: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAGgtaatgattt ... tactatctagGAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCT
EST: ATAGCAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAG GAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCT
genomic: ATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAGgtaatgattt ... tactatctagGAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTGCTGAGAAACAGGGTGAGCAGGATGATGCTCCAACTGGAGAGAAGGATAACAAGGAGGGTGCTGCAAATGAGGAAGAAGAGAAGGAAGAGGATAAGgtaatgattttcatctgttctctactctgtctaaattgaggaaactgcactgctattttagaggtttgctgaaataaaaaatttattcttgtgtgtctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat