Sequence
atgc intronic sequence ATGC exonic sequence...cgtgctctaatgtcacgaaagcgacataaacttggacatgcacagtgacatcgccttgtaacatctactacatcgaaaactttcacaaagatgttcttagAGAGAAAAAGGAACAAATTCAGAAACAGGACCAGAGAACATAATCACAAACATAGAACAAGAACCAGAGCTGGGGCCGAATAACACTGAAAAATGGACCA
Basic information
species | Oryza sativa |
transcript | LOC_Os01g51940.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgacatcgccttgtaacatctactacatcgaaaactttcacaaagatgttcttagAGAGAAAAAGGAACAAATTCAGAAACAGGACCAGAGAACATAATCACAAACATAGAACAAGAACCAGAGCTGGGGCCGAATAACACTGAAAAATGGACCA
ttgtaac putative branch site (score: 2)
tgttctt putative PPT
aaaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cgtgctctaatgtcacgaaagcgacataaacttggacatgcacagtgacatcgccttgtaacatctactacatcgaaaactttcacaaagatgttcttagAGAGAAAAAGGAACAAATTCAGAAACAGGACCAGAGAACATAATCACAAACATAGAACAAGAACCAGAGCTGGGGCCGAATAACACTGAAAAATGGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
cgtgctc
- - - - - - -cacgaaa
- - - - - - - - - - - -acataaa
- - - - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaag