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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgcccaatctctgaaccactctcgccgcttcatcatcttctgaactctgaaaaaaaacgaaaaatttcgccggcgatcgaccgtctttatcatcagtgtttctccgtgtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAGATCCGCCACGCCGTCGCGCACCCCAAGGTGCGGTACCTGCACACCCCGG

Basic information

species Oryza sativa
transcript LOC_Os01g51870.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88576191|gb|CI670336.1|CI670336
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|88378428|gb|CI636375.1|CI636375
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|29615400|gb|CB620412.1|CB620412
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|88571810|gb|CI663183.1|CI663183
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|66914847|gb|CX101695.1|CX101695
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|58592584|gb|CF990892.1|CF990892
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTGGATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|218493465|gb|FG966715.1|FG966715
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|88572779|gb|CI664350.1|CI664350
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|88571809|gb|CI663182.1|CI663182
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|88572719|gb|CI664290.1|CI664290
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|88354080|gb|CI636278.1|CI636278
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|88308093|gb|CI647920.1|CI647920
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|87023722|gb|CI286473.1|CI286473
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|58592155|gb|CF990463.1|CF990463
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
EST: gi|88377865|gb|CI637999.1|CI637999
EST:     ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGC                         ATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG
genomic: ACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCgtaagcgccc ... gtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttcgccggcgatcgaccgtctttatcatcagtgtttctccgtgtgcgttcagATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAGATCCGCCACGCCGTCGCGCACCCCAAGGTGCGGTACCTGCACACCCCGG
                       tttatcat  TA-rich tract