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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attatgacactgaaagatctatgcctttatacagcataatagtatgaacccatcatgtcagctcatgccattcattaatatgatatcatcaatgtttcagATATGGGACCATGGAAGAGTTGAAGGAGGCTGTGAAACGTTTTCATGAAGCCGGTATGAAGGTTCTTGGTGATGCCGTCCTGAATCACAGGTGTGCTCAA

Basic information

species Oryza sativa
transcript LOC_Os01g51754.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29678996|gb|CB675271.1|CB675271
EST:     GTGTCGCCTGAAGGATACATGCCAAGGGATTTGTATAATCTAAATTCCAG                         ATATGGGACCATGGAAGAGTTGAAGGAGGCTGTGAAACGTTTTCATGAAGC
genomic: GTGTCGCCTGAAGGATACATGCCAAGGGATTTGTATAATCTAAATTCCAGgtatatctct ... aatgtttcagATATGGGACCATGGAAGAGTTGAAGGAGGCTGTGAAACGTTTTCATGAAGC
EST: gi|86888624|gb|CI305692.1|CI305692
EST:     GTGTCGCCTGAAGGATACATGCCAAGGGATTTGTATAATCTAAATTCCAG                         ATATGGGACCATGGAAGAGTTGAAGGAGGCTGTGAAACGTTTTCATGAAGC
genomic: GTGTCGCCTGAAGGATACATGCCAAGGGATTTGTATAATCTAAATTCCAGgtatatctct ... aatgtttcagATATGGGACCATGGAAGAGTTGAAGGAGGCTGTGAAACGTTTTCATGAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacccatcatgtcagctcatgccattcattaatatgatatcatcaatgtttcagATATGGGACCATGGAAGAGTTGAAGGAGGCTGTGAAACGTTTTCATGAAGCCGGTATGAAGGTTCTTGGTGATGCCGTCCTGAATCACAGGTGTGCTCAA
                           cattaat  putative branch site (score: 3)
                        attcattaatatgata  TA-rich tract