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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtaagccccggggtgaaaaaagtaacccactctctaaaacacacttgttcccagccctaactatccttttgtgttcatagGATCCTCTTGATATCCGCTACTCTGATCACTTAGCTGCAGAGTTCTGGGAGAAGCATATAACTGCGGGTTGCATCCTGAATCACCTGTCAGTTGTCGCCT

Basic information

species Oryza sativa
transcript LOC_Os01g51740.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccactctctaaaacacacttgttcccagccctaactatccttttgtgttcatagGATCCTCTTGATATCCGCTACTCTGATCACTTAGCTGCAGAGTTCTGGGAGAAGCATATAACTGCGGGTTGCATCCTGAATCACCTGTCAGTTGTCGCCT
                             ccctaac  putative branch site (score: 2)
                                      tccttttgt  putative PPT
       tctaaaa  TA-rich tract