1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGATTTCCCTCAAACCAATGAGGACACTGAAAGAGATACGCACTGATGTGTGCCCTgtaagtgctctactactatttactaagatttttccacatgcaatccttgctcaataagttgtcttgctaatgtttttacgatctcttcag
species | Oryza sativa |
transcript | LOC_Os01g51630.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCCTCAAACCAATGAGGACACTGAAAGAGATACGCACTGATGTGTGCCCT GCACTCAGCATACAACAGCTTGAGCGCATAGTTAGTATGTACTGGGATGACEST: gi|29628568|gb|CB633579.1|CB633579
genomic: CCCTCAAACCAATGAGGACACTGAAAGAGATACGCACTGATGTGTGCCCTgtaagtgctc ... atctcttcagGCACTCAGCATACAACAGCTTGAGCGCATAGTTAGTATGTACTGGGATGAC
EST: CCCTCAAACCAATGAGGACACTGAAAGAGATACGCACTGATGTGTGCCCT GCACTCAGCATACAACAGCTTGAGCGCATAGTTAGTATGTACTGGGATGACEST: gi|29629431|gb|CB634440.1|CB634440
genomic: CCCTCAAACCAATGAGGACACTGAAAGAGATACGCACTGATGTGTGCCCTgtaagtgctc ... atctcttcagGCACTCAGCATACAACAGCTTGAGCGCATAGTTAGTATGTACTGGGATGAC
EST: CCCTCAAACCAATGAGGACACTGAAAGAGATACGCACTGATGTGTGCCCT GCACTCAGCATACAACAGCTTGAGCGCATAGTTAGTATGTACTGGGATGAC
genomic: CCCTCAAACCAATGAGGACACTGAAAGAGATACGCACTGATGTGTGCCCTgtaagtgctc ... atctcttcagGCACTCAGCATACAACAGCTTGAGCGCATAGTTAGTATGTACTGGGATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATTTCCCTCAAACCAATGAGGACACTGAAAGAGATACGCACTGATGTGTGCCCTgtaagtgctctactactatttactaagatttttccacatgcaatccttgctcaataagttgtcttgctaatgtttttacgatctcttcag
- - - - - - - - - - - - - - - AAGAGA