1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAACAATCTCAAGAGTGAGCTTAAGAGGATCTCGGCGCCCAATGCAAGGCAGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCGgtgagctccatgatttgtattactagctcaatttgaccatattgcagattttaataattggcagcatctagttttgtttgtccattgtgttgctgtagtt...
species | Oryza sativa |
transcript | LOC_Os01g51120.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCG GCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAATEST: gi|33688115|gb|CF316354.1|CF316354
genomic: CGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCGgtgagctcca ... tgtaaatcagGCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAAT
EST: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCG GCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAATEST: gi|300215677|gb|HO088303.1|HO088303
genomic: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCGgtgagctcca ... tgtaaatcagGCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAAT
EST: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCG GCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAATEST: gi|10611250|gb|AU108201.1|AU108201
genomic: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCGgtgagctcca ... tgtaaatcagGCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAAT
EST: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCG GCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAATEST: gi|29660224|gb|CB656499.1|CB656499
genomic: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCGgtgagctcca ... tgtaaatcagGCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAAT
EST: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCG GCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAATEST: gi|33686214|gb|CF314453.1|CF314453
genomic: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCGgtgagctcca ... tgtaaatcagGCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAAT
EST: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCG GCGTCTACTGAEST: gi|33686215|gb|CF314454.1|CF314454
genomic: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCGgtgagctcca ... tgtaaatcagGCGTCTACTGA
EST: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCG GCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAATEST: gi|33818794|gb|CF335221.1|CF335221
genomic: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCGgtgagctcca ... tgtaaatcagGCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAAT
EST: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCG GCGTCTACTGATCAGAGGGGGAAGATTGATGATGACAACAGAAAGACTGAAEST: gi|88204477|gb|CI204326.1|CI204326
genomic: AGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCGgtgagctcca ... tgtaaatcagGCGTCTACTGATCAGAGGGG-AAGATTGATGATGACAACAGAAAGACTGAA
EST: ACACTCTCGCG GCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAAT
genomic: ACACTCTCGCGgtgagctcca ... tgtaaatcagGCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAGACTGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACAATCTCAAGAGTGAGCTTAAGAGGATCTCGGCGCCCAATGCAAGGCAGGCTACACGGGAGGAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCGgtgagctccatgatttgtattactagctcaatttgaccatattgcagattttaataattggcagcatctagttttgtttgtccattgtgttgctgtagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT