Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33693217|gb|CF321456.1|CF321456EST: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|89181730|gb|CI113236.1|CI113236EST: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|88504698|gb|CI432204.1|CI432204EST: GGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: GGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|88490909|gb|CI428181.1|CI428181EST: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCNCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|89181475|gb|CI112981.1|CI112981EST: TCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCGTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: TCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGC-TGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|88488325|gb|CI425596.1|CI425596EST: AAGGACGGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: AAGGACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|88475611|gb|CI412882.1|CI412882EST: ACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: ACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|86260041|gb|CI065914.1|CI065914EST: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|88531852|gb|CI458369.1|CI458369EST: AGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: AGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|88514182|gb|CI441688.1|CI441688EST: AGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: AGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|218481362|gb|FG954013.1|FG954013EST: GAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: GAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|88481108|gb|CI418379.1|CI418379EST: GGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: GGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|88486473|gb|CI423744.1|CI423744EST: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|88512126|gb|CI439632.1|CI439632EST: GACGGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: GACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|88483344|gb|CI420615.1|CI420615EST: GCCCGCCAAAG GGATAAGTTTGACAGGTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: GCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|88504791|gb|CI432297.1|CI432297EST: AGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCANTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: AGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|88204074|gb|CI203923.1|CI203923EST: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|86506674|gb|CI149307.1|CI149307EST: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: GTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
EST:
gi|88512283|gb|CI439789.1|CI439789EST: CGGCAAGGAGCTGCCCGCCAAAG GGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
genomic: CGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
69 (upstream exon),
74 (downstream exon)
Score:
17TCGGCCAGGAGGAGGGTGACTCTTCAGGAGTTCAAGGGCAAGACGCTTCTGTCCATCCGAGAGTACTACTTCAAGGACGGCAAGGAGCTGCCCGCCAAAGgtgatgcaca ... tgaattgcagGGATAAGTTTGACAGTTGAGCAGTGGGAAGCATTTCGTGATTCTGTGCCAGCAATAGAGGATGCCATTAAAAAGCTTGGAGAATCATCGGACTGAAAGCA
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