1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaaatgatgctattaccttttctttgtatggatgtagtgtctttatatatactatattgctactagcgttgcatgatgtgcttgtttggatctgctgcagTGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGGAAGTGCCGATTACTAGCTCAGTGAACACTGCAGTGGTGCCTGTGCCTGT
species | Oryza sativa |
transcript | LOC_Os01g50340.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCCTNNNNNNNGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAG TGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGGEST: gi|88310643|gb|CI672504.1|CI672504
genomic: CCTCCTCCCCCCCGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAGgtcagtcccc ... tctgctgcagTGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGG
EST: CCTCCTNNNNNNNGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAG TGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGGEST: gi|88591324|gb|CI708251.1|CI708251
genomic: CCTCCTCCCCCCCGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAGgtcagtcccc ... tctgctgcagTGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGG
EST: CCTCCTNNNNNNNGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAG TGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGGEST: gi|88590698|gb|CI707579.1|CI707579
genomic: CCTCCTCCCCCCCGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAGgtcagtcccc ... tctgctgcagTGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGG
EST: CCTCCTNNNNNNNGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAG TGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGGEST: gi|88725922|gb|CI747434.1|CI747434
genomic: CCTCCTCCCCCCCGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAGgtcagtcccc ... tctgctgcagTGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGG
EST: CCTCCTNNNNNNNGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAG TGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGGEST: gi|88392099|gb|CI683930.1|CI683930
genomic: CCTCCTCCCCCCCGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAGgtcagtcccc ... tctgctgcagTGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGG
EST: CCTCCTNNNNNNNGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAG TGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGGEST: gi|29635879|gb|CB640888.1|CB640888
genomic: CCTCCTCCCCCCCGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAGgtcagtcccc ... tctgctgcagTGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGG
EST: CCTCCTNNNNNNNGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAG TGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGGEST: gi|88328646|gb|CI678443.1|CI678443
genomic: CCTCCTCCCCCCCGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAGgtcagtcccc ... tctgctgcagTGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGG
EST: CCTCCTNNNNNNNGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAG TGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGG
genomic: CCTCCTCCCCCCCGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAGgtcagtcccc ... tctgctgcagTGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGG
tatatactatattgctactagcgttgcatgatgtgcttgtttggatctgctgcagTGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGGAAGTGCCGATTACTAGCTCAGTGAACACTGCAGTGGTGCCTGTGCCTGT
actatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatgatgctattaccttttctttgtatggatgtagtgtctttatatatactatattgctactagcgttgcatgatgtgcttgtttggatctgctgcagTGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGGAAGTGCCGATTACTAGCTCAGTGAACACTGCAGTGGTGCCTGTGCCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - tgatgct
- - - - - - - - - - - - - -atggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatga