1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGATGAGATAGTTCGCAACCTTAGGAAGGTCAAACACCCAGCCTTTGACTCCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAgtatgccacaacctcttctcttgagttatcttcttcccttcagtcattatacagggtatccagtgtctggcatgtgaacaaacttcattctcatgtcaatgtgttgcag
species | Oryza sativa |
transcript | LOC_Os01g49770.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAA GAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGTCACAGCEST: gi|88519249|gb|CI446903.1|CI446903
genomic: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAgtatgccaca ... tgtgttgcagGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGC
EST: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAA GAAGAGTTTGAANCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGCEST: gi|86885857|gb|CI295880.1|CI295880
genomic: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAgtatgccaca ... tgtgttgcagGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGC
EST: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAA GAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGCEST: gi|88983372|gb|CI028608.1|CI028608
genomic: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAgtatgccaca ... tgtgttgcagGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGC
EST: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAA GAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGCEST: gi|163920093|gb|EG709863.1|EG709863
genomic: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAgtatgccaca ... tgtgttgcagGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGC
EST: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAA GAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGCEST: gi|88460629|gb|CI534501.1|CI534501
genomic: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAgtatgccaca ... tgtgttgcagGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGC
EST: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGANATGCAGTATTTGTCAA GAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGCEST: gi|702896|gb|D49187.1|D49187
genomic: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAgtatgccaca ... tgtgttgcagGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGC
EST: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAA GAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGCEST: gi|86885038|gb|CI315609.1|CI315609
genomic: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAgtatgccaca ... tgtgttgcagGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGC
EST: CCTCGTTCC-GTATTCAACAGAAATGGAAAAGAAATACAGTATTTTTCAA GAAGAGTTTGAAGCCAATTAAGAGATGGGGAGGCTGGATTGCGGCCACAGCEST: gi|9865627|gb|AU101377.1|AU101377
genomic: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAgtatgccaca ... tgtgttgcagGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGC
EST: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAA GAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGCEST: gi|15849993|gb|BI798269.1|BI798269
genomic: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAgtatgccaca ... tgtgttgcagGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGC
EST: CTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCCAA GAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCCTGGATTGCGGTCACAEST: gi|33801112|gb|CF326429.1|CF326429
genomic: CTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGT-CAAgtatgccaca ... tgtgttgcagGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGG-CTGGATTGCGGCCACA
EST: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAA GAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGC
genomic: CCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAgtatgccaca ... tgtgttgcagGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGAGATAGTTCGCAACCTTAGGAAGGTCAAACACCCAGCCTTTGACTCCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAgtatgccacaacctcttctcttgagttatcttcttcccttcagtcattatacagggtatccagtgtctggcatgtgaacaaacttcattctcatgtcaatgtgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA