1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atacacctgctgcattttgtagagcagatgcttagcacagcatttatgttgatctcaccacaagattatctaaacatgtttgagaatgccttttgttcagGTTAACTGAAGGGGTGGTGCGCTCTGTAAATAACCTGCTCGAGAAGTTCCATCAATCGTTTTTCCTGTATTTCCTTACAGCCCCAAGCAAGTTCATTTCA
species | Oryza sativa |
transcript | LOC_Os01g48980.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
atgttgatctcaccacaagattatctaaacatgtttgagaatgccttttgttcagGTTAACTGAAGGGGTGGTGCGCTCTGTAAATAACCTGCTCGAGAAGTTCCATCAATCGTTTTTCCTGTATTTCCTTACAGCCCCAAGCAAGTTCATTTCA
atctaaa putative branch site (score: 4)
ccttttgttc putative PPT
attatctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacacctgctgcattttgtagagcagatgcttagcacagcatttatgttgatctcaccacaagattatctaaacatgtttgagaatgccttttgttcagGTTAACTGAAGGGGTGGTGCGCTCTGTAAATAACCTGCTCGAGAAGTTCCATCAATCGTTTTTCCTGTATTTCCTTACAGCCCCAAGCAAGTTCATTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - -tgctgca
- - - - - - - - - - - - cagatgc
- - - - - - - - - - - - - - - - - gcacagc
- - - - - - - - - - - - - - - - - - - - - - -atgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgcc