1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgagttcatggttcaccctttttttgtggggggaaatatacttttgccaattcttgtaactttgttgtaaaacttctaattattacactatgatgaccagGTGAACGCAAGTGGCCAGTTCTGCGGCGTGGCTGAGATGGTCGGTCCGGTAGATTTCAACAGGAATATGAACTTCTGGCAGCAGGACAAGTGGAATGGAT
species | Oryza sativa |
transcript | LOC_Os01g48790.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAGTTGCTGAGAAAGGAACCAAATGTCCTATGTTCCTTTTTCT-CTCT GTGAACGCAAGTGGCCAGTTCTGCGGCGTEST: gi|29646739|gb|CB651746.1|CB651746
genomic: AAGAGTTGCTGAGAAAGGAACCAAATGTCCTATGTTCCTTTT-CTTCTCTgtaagttaaa ... tgatgaccagGTGAACGCAAGTGGCCAGTTCTGCGGCGT
EST: AAAGAGTTGCTGAGAAAGGAACCAAATGTCCTATGTTCCTTTTCTTCTCT GTGAACGCAAGTGGCCAGTTCTGCGGCGTGGCTGAGATGGTCGGTCCGGTAEST: gi|29640181|gb|CB645190.1|CB645190
genomic: AAAGAGTTGCTGAGAAAGGAACCAAATGTCCTATGTTCCTTTTCTTCTCTgtaagttaaa ... tgatgaccagGTGAACGCAAGTGGCCAGTTCTGCGGCGTGGCTGAGATGGTCGGTCCGGTA
EST: AAAGAGTTGCTGAGAAAGGAACCAAATGTCCTATGTTCCTTTTCTTCTCT GTGAACGCAAGTGGCCAGTTCTGCGGCGTGGCTGAGATGGTCGGTCCGGTA
genomic: AAAGAGTTGCTGAGAAAGGAACCAAATGTCCTATGTTCCTTTTCTTCTCTgtaagttaaa ... tgatgaccagGTGAACGCAAGTGGCCAGTTCTGCGGCGTGGCTGAGATGGTCGGTCCGGTA
gccaattcttgtaactttgttgtaaaacttctaattattacactatgatgaccagGTGAACGCAAGTGGCCAGTTCTGCGGCGTGGCTGAGATGGTCGGTCCGGTAGATTTCAACAGGAATATGAACTTCTGGCAGCAGGACAAGTGGAATGGAT
ttctaat putative branch site (score: 2)
ttgtaaaacttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagttcatggttcaccctttttttgtggggggaaatatacttttgccaattcttgtaactttgttgtaaaacttctaattattacactatgatgaccagGTGAACGCAAGTGGCCAGTTCTGCGGCGTGGCTGAGATGGTCGGTCCGGTAGATTTCAACAGGAATATGAACTTCTGGCAGCAGGACAAGTGGAATGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA