1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agtgaaattccaatcactgaattcacggtatatatagtgagtttgtgacactgacagcagaaagccagaaatgatatgttctcgtgctctgtggctgcagGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGC
species | Oryza sativa |
transcript | LOC_Os01g47580.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCAT GGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCAEST: gi|3768435|gb|AU032462.1|AU032462
genomic: GAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATgtgagtcaag ... gtggctgcagGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCA
EST: AGGGACACAAGAGCTTCCCGAGCGGCCACACTTCAT GGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCA
genomic: AGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATgtgagtcaag ... gtggctgcagGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCA
tgacactgacagcagaaagccagaaatgatatgttctcgtgctctgtggctgcagGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGC
cactgac putative branch site (score: 2)
aaatgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgaaattccaatcactgaattcacggtatatatagtgagtttgtgacactgacagcagaaagccagaaatgatatgttctcgtgctctgtggctgcagGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG