1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtgcccgaggagtttacaactaatgcacagtctctaactctctatgactcatgccaggtgtttatgcactaaccgtatacattctttgtgcatatagCTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGGAACAGTCCAACAGCCATCCGGGTGCTGAAATCTGCACTCAATGCAGCTG
species | Oryza sativa |
transcript | LOC_Os01g47350.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACACAGCTGATGAGGCAGACAGAATGGGTCTCGTCAATGTAGTAGTACCA CTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGGEST: gi|58675867|gb|CK064554.1|CK064554
genomic: ACACAGCTGATGAGGCAGACAGAATGGGTCTCGTCAATGTAGTAGTACCAgtgagtgccc ... gtgcatatagCTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGG
EST: AGAATGGGTCTCGTCAATGTAGTAGTACCA CTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGGEST: gi|29656537|gb|CB652812.1|CB652812
genomic: AGAATGGGTCTCGTCAATGTAGTAGTACCAgtgagtgccc ... gtgcatatagCTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGG
EST: ACACAGCTGATGAGGCAGACAGAATGGGTCTCGTCAATGTAGTAGTACCA CTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGGEST: gi|38479469|gb|CF963584.1|CF963584
genomic: ACACAGCTGATGAGGCAGACAGAATGGGTCTCGTCAATGTAGTAGTACCAgtgagtgccc ... gtgcatatagCTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGG
EST: ACACAGCTGATGAGGCAGACAGAATGGGTCTCGTCAATGTAGTAGTACCA CTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGGEST: gi|29668603|gb|CB664878.1|CB664878
genomic: ACACAGCTGATGAGGCAGACAGAATGGGTCTCGTCAATGTAGTAGTACCAgtgagtgccc ... gtgcatatagCTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGG
EST: ACACAGCTGATGAGGCAGACAGAATGGGTCTCGTCAATGTAGTAGTACCA CTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGGEST: gi|29668562|gb|CB664837.1|CB664837
genomic: ACACAGCTGATGAGGCAGACAGAATGGGTCTCGTCAATGTAGTAGTACCAgtgagtgccc ... gtgcatatagCTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGG
EST: ACACAGCTGATGAGGCAGACAGAATGGGTCTCGTCAATGTAGTAGTACCA CTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGG
genomic: ACACAGCTGATGAGGCAGACAGAATGGGTCTCGTCAATGTAGTAGTACCAgtgagtgccc ... gtgcatatagCTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGG
tatgactcatgccaggtgtttatgcactaaccgtatacattctttgtgcatatagCTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGGAACAGTCCAACAGCCATCCGGGTGCTGAAATCTGCACTCAATGCAGCTG
cactaac putative branch site (score: 13)
ttctttgt putative PPT
tatacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgcccgaggagtttacaactaatgcacagtctctaactctctatgactcatgccaggtgtttatgcactaaccgtatacattctttgtgcatatagCTCGCTGATTTGGAGCGAGAAACGGTGAAATGGTGCCGAAAAATCTTGAGGAACAGTCCAACAGCCATCCGGGTGCTGAAATCTGCACTCAATGCAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG