1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAAATATTGTTTGATTGCAAAAGATGTTGTCAAGCTTAAAAAATGTGGAAATGGATGGCGGGGGGCCGAAGATGGCAGAAGCAACTTTGCATGTTTGGAGgtaaaataacactgaattagagcccttaggaataatcctggaggattggttccttattatagtatcgcttatccttttgcattacctttctcttatttatacattttttgatcgattctgacag
species | Oryza sativa |
transcript | LOC_Os01g46590.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGGATGGCGGGGGGCCGAAGATGGCAGAAGCAACTTTGCATGTTTGGAG GATGAGTACTGTTTGGTGCCTGTTCTAGGCCCTGGGATTTCATGGATAGAGEST: gi|58602105|gb|CK012633.1|CK012633
genomic: ATGGATGGCGGGGGGCCGAAGATGGCAGAAGCAACTTTGCATGTTTGGAGgtaaaataac ... attctgacagGATGAGTACTGTTTGGTGCCTGTTCTAGGCCCTGGGATTTCATGGATAGAG
EST: ATGGATGGCGGGGGGCCGAAGATGGCAGAAGCAACTTTGCATGTTTGGAG GATGAGTACTGTATGGTGCCTGTTCTAGGCCCTGEST: gi|25804323|gb|CA760284.1|CA760284
genomic: ATGGATGGCGGGGGGCCGAAGATGGCAGAAGCAACTTTGCATGTTTGGAGgtaaaataac ... attctgacagGATGAGTACTGTTTGGTGCCTGTTCTAGGCCCTG
EST: ATGGATGGCGGGGGGCCGAAGATGGCAGAAGCAACTTTGCATGTTTGGAG GATGAGTACTGTTTGGTGCCTGTTCTAGGCCCTGGGATTTCATGGATAGAG
genomic: ATGGATGGCGGGGGGCCGAAGATGGCAGAAGCAACTTTGCATGTTTGGAGgtaaaataac ... attctgacagGATGAGTACTGTTTGGTGCCTGTTCTAGGCCCTGGGATTTCATGGATAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATATTGTTTGATTGCAAAAGATGTTGTCAAGCTTAAAAAATGTGGAAATGGATGGCGGGGGGCCGAAGATGGCAGAAGCAACTTTGCATGTTTGGAGgtaaaataacactgaattagagcccttaggaataatcctggaggattggttccttattatagtatcgcttatccttttgcattacctttctcttatttatacattttttgatcgattctgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG