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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaccgtgcgagtaggcacttacaaaattcgggtttgcttccccagcaggatatactctatgccaaaaaaatatatatatttttcaaggtttgaatttagcaaaatttgttcaaattcagtcaaactatattcctttttttttcctgttggccttcaaattcagtcaaattttgaaccctgcagGTATTGACAGAGATAGCGAGGCTGATGGACAAATACAAGGACGAGGAGACCAGCATCACCGTCATCGGCCACAGCCTGGGCGCCACCCTGGCCACCCTGA

Basic information

species Oryza sativa
transcript LOC_Os01g46250.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46250.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G021807_T01 (Zea mays), 3'ss of exon 1
gtaagttaccgtgcgagtaggcacttacaaaattcgggtttgcttccccagcaggatatactctatgccaaaaaaatatatatatttttcaaggtttgaatttagcaaaatttgttcaaattcagtcaaactatattcctttttttttcctgttggccttcaaattcagtcaa-attttg-aaccctgcagGTATTGACAGAGATAGCGAGGCTGATGGACAAATACAAGGACGAGGAGACCAGCATCACCGTCATCGGCCACAGCCTGGGCGCCACCCTGGCCACCCTGA
                                                                                           |  |  ||   ||||||  ||| |  ||||    | |  || | | | |   ||| || |||     | |  |   ||| |   || || || | ||||||| ||||||||||| |  ||||| ||||||||||| || | |||||| ||||||||||||||| ||||||||||||| ||||| ||  ||||||||||||
----------------------------------------------------------------------------------------attatctcggatcctagcaa--tttttagaaatatgattat-ctctttgcttccatttctcttgtgcatatacttagcaagttattgttgtgcaaacatgcagGTGTTGACAGAGATCGTTAGGCTAATGGACAAATATAAAGGCGAGGAAACCAGCATCACCGTCGTCGGCCACAGCCTCGGCGCGACAATGGCCACCCTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcctttttttttcctgttggccttcaaattcagtcaaattttgaaccctgcagGTATTGACAGAGATAGCGAGGCTGATGGACAAATACAAGGACGAGGAGACCAGCATCACCGTCATCGGCCACAGCCTGGGCGCCACCCTGGCCACCCTGA
     ttttttttt  TA-rich tract