1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gcaagacttctgttgctttgagacttaattccaagtgaactcgtgcatcaattggtcctaaatatgataacttggaattctgcagGTGATACAAGTGGCTACGTCAGGAGAGGTTGTTGGAGAAATTGGGGTTCTTTGCTACAGACCTCAGCTATTCACAGTTCGAACAAGATCCTTGTGCCAGT
species | Oryza sativa |
transcript | LOC_Os01g45990.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGTTAGTAGAGCAGCAAAATGGTGCAGACCAG GTGATACAAGTGGCTACGTCAGGAGAGGTTGTTGGAGAAATTGGGGTTCTTEST: gi|88731536|gb|CI755149.1|CI755149
genomic: GAGTTAGTAGAGCAGCAAAATGGTGCAGACCAGgcaagacttc ... aattctgcagGTGATACAAGTGGCTACGTCAGGAGAGGTTGTTGGAGAAATTGGGGTTCTT
EST: GAGTTACTAGAGCAGCAAAATGGTGCAGACCAG GTGATACAAGTGGCTACGTCAGGAGAGGTTGTTGGAGAAATTGGGGTTCTT
genomic: GAGTTAGTAGAGCAGCAAAATGGTGCAGACCAGgcaagacttc ... aattctgcagGTGATACAAGTGGCTACGTCAGGAGAGGTTGTTGGAGAAATTGGGGTTCTT
ccaagtgaactcgtgcatcaattggtcctaaatatgataacttggaattctgcagGTGATACAAGTGGCTACGTCAGGAGAGGTTGTTGGAGAAATTGGGGTTCTTTGCTACAGACCTCAGCTATTCACAGTTCGAACAAGATCCTTGTGCCAGT
tgataac putative branch site (score: 7)
taaatatgataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagacttctgttgctttgagacttaattccaagtgaactcgtgcatcaattggtcctaaatatgataacttggaattctgcagGTGATACAAGTGGCTACGTCAGGAGAGGTTGTTGGAGAAATTGGGGTTCTTTGCTACAGACCTCAGCTATTCACAGTTCGAACAAGATCCTTGTGCCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT