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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctttattagtagtaattaattattagctgctgtctaggtagcccaagagcgacctgtgaatctatgattagttgttgtttgatggttaagctctgccaatggtagAGTTTTCGTAG

Basic information

species Oryza sativa
transcript LOC_Os01g45890.1
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacctgtgaatctatgattagttgttgtttgatggttaagctctgccaatggtagAGTTTTCGTAG
                          gtttgat  putative branch site (score: 5)
                                        ctctgcc  putative PPT
            tatgatta  TA-rich tract